Jul 12 12:19:16.593 INFO checking chemfiles-sys-0.5.0 against master#ae5b629efd79de78e6ba7ef493c32857bd7f9cf9 for pr-52234
Jul 12 12:19:16.593 INFO running: cargo +ae5b629efd79de78e6ba7ef493c32857bd7f9cf9-alt check --frozen --all --all-targets
Jul 12 12:19:16.593 INFO creating container for: cargo +ae5b629efd79de78e6ba7ef493c32857bd7f9cf9-alt check --frozen --all --all-targets
Jul 12 12:19:16.593 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-6/pr-52234/master#ae5b629efd79de78e6ba7ef493c32857bd7f9cf9:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-52234/worker-6/master#ae5b629efd79de78e6ba7ef493c32857bd7f9cf9:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=500" "-e" "CMD=cargo +ae5b629efd79de78e6ba7ef493c32857bd7f9cf9-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "crater"`
Jul 12 12:19:16.869 INFO blam! a48a01f4851c68bd4b7febcc82c0e2798bac219d169f650b5599b28e3d829364
Jul 12 12:19:16.870 INFO running `"docker" "start" "-a" "a48a01f4851c68bd4b7febcc82c0e2798bac219d169f650b5599b28e3d829364"`
Jul 12 12:19:17.951 INFO kablam!    Compiling chemfiles-sys v0.5.0 (file:///source)
Jul 12 12:19:26.981 INFO kablam! error: failed to run custom build command for `chemfiles-sys v0.5.0 (file:///source)`
Jul 12 12:19:26.981 INFO kablam! process didn't exit successfully: `/target/debug/build/chemfiles-sys-dd6bc43dd091cf14/build-script-build` (exit code: 101)
Jul 12 12:19:26.981 INFO kablam! --- stdout
Jul 12 12:19:26.981 INFO kablam! running: "cmake" "/source/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/target/debug/build/chemfiles-sys-f69c95683941a5a5/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
Jul 12 12:19:26.981 INFO kablam! -- The C compiler identification is GNU 5.4.0
Jul 12 12:19:26.981 INFO kablam! -- The CXX compiler identification is GNU 5.4.0
Jul 12 12:19:26.981 INFO kablam! -- Check for working C compiler: /usr/bin/cc
Jul 12 12:19:26.981 INFO kablam! -- Check for working C compiler: /usr/bin/cc -- works
Jul 12 12:19:26.981 INFO kablam! -- Detecting C compiler ABI info
Jul 12 12:19:26.981 INFO kablam! -- Detecting C compiler ABI info - done
Jul 12 12:19:26.981 INFO kablam! -- Detecting C compile features
Jul 12 12:19:26.981 INFO kablam! -- Detecting C compile features - done
Jul 12 12:19:26.981 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++
Jul 12 12:19:26.981 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ -- works
Jul 12 12:19:26.981 INFO kablam! -- Detecting CXX compiler ABI info
Jul 12 12:19:26.981 INFO kablam! -- Detecting CXX compiler ABI info - done
Jul 12 12:19:26.981 INFO kablam! -- Detecting CXX compile features
Jul 12 12:19:26.981 INFO kablam! -- Detecting CXX compile features - done
Jul 12 12:19:26.981 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX11
Jul 12 12:19:26.981 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX11 - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX0X
Jul 12 12:19:26.982 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX0X - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wall
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wall - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wall
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wall - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wuninitialized
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wuninitialized - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wuninitialized
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wuninitialized - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wconversion
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wconversion - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wconversion
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wconversion - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-conversion
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-conversion - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-conversion
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-conversion - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-promo
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-promo - Success
Jul 12 12:19:26.982 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-promo
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-promo - Failed
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-override
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-override - Success
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-override
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-override - Failed
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-final-types
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-final-types - Success
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-final-types
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-final-types - Success
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wpedantic
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wpedantic - Success
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wpedantic
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wpedantic - Success
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-pedantic
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-pedantic - Success
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-pedantic
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-pedantic - Success
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdocumentation
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdocumentation - Failed
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wdocumentation
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wdocumentation - Failed
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdeprecated
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdeprecated - Success
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wdeprecated
Jul 12 12:19:26.983 INFO kablam! -- Performing Test CC_SUPPORTS-Wdeprecated - Success
Jul 12 12:19:26.984 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra-semi
Jul 12 12:19:26.984 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra-semi - Failed
Jul 12 12:19:26.984 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra-semi
Jul 12 12:19:26.984 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra-semi - Failed
Jul 12 12:19:26.984 INFO kablam! -- Performing Test CXX_SUPPORTS-Wno-potentially-evaluated-expression
Jul 12 12:19:26.984 INFO kablam! -- Performing Test CXX_SUPPORTS-Wno-potentially-evaluated-expression - Failed
Jul 12 12:19:26.984 INFO kablam! -- Performing Test CC_SUPPORTS-Wno-potentially-evaluated-expression
Jul 12 12:19:26.984 INFO kablam! -- Performing Test CC_SUPPORTS-Wno-potentially-evaluated-expression - Failed
Jul 12 12:19:26.984 INFO kablam! -- Performing Test COMPILER_SUPPORTS_C99
Jul 12 12:19:26.984 INFO kablam! -- Performing Test COMPILER_SUPPORTS_C99 - Success
Jul 12 12:19:26.984 INFO kablam! -- Found NetCDF: /usr/lib/x86_64-linux-gnu/libnetcdf.so  
Jul 12 12:19:26.984 INFO kablam! -- Found NetCDF library. Consider activating the associated format with -DENABLE_NETCDF=ON
Jul 12 12:19:26.984 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
Jul 12 12:19:26.984 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
Jul 12 12:19:26.984 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
Jul 12 12:19:26.984 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
Jul 12 12:19:26.984 INFO kablam! -- Performing Test COMPILER_HAS_DEPRECATED_ATTR
Jul 12 12:19:26.984 INFO kablam! -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
Jul 12 12:19:26.984 INFO kablam! -- Configuring incomplete, errors occurred!
Jul 12 12:19:26.984 INFO kablam! See also "/target/debug/build/chemfiles-sys-f69c95683941a5a5/out/build/CMakeFiles/CMakeOutput.log".
Jul 12 12:19:26.985 INFO kablam! See also "/target/debug/build/chemfiles-sys-f69c95683941a5a5/out/build/CMakeFiles/CMakeError.log".
Jul 12 12:19:26.985 INFO kablam! 
Jul 12 12:19:26.985 INFO kablam! --- stderr
Jul 12 12:19:26.985 INFO kablam! CMake Error: Could not open file for write in copy operation /source/chemfiles/include/chemfiles/exports.hpp.tmp
Jul 12 12:19:26.985 INFO kablam! CMake Error: : System Error: Read-only file system
Jul 12 12:19:26.985 INFO kablam! CMake Error at /usr/share/cmake-3.5/Modules/GenerateExportHeader.cmake:362 (configure_file):
Jul 12 12:19:26.985 INFO kablam!   configure_file Problem configuring file
Jul 12 12:19:26.985 INFO kablam! Call Stack (most recent call first):
Jul 12 12:19:26.985 INFO kablam!   /usr/share/cmake-3.5/Modules/GenerateExportHeader.cmake:378 (_do_generate_export_header)
Jul 12 12:19:26.985 INFO kablam!   chemfiles/CMakeLists.txt:71 (generate_export_header)
Jul 12 12:19:26.985 INFO kablam! 
Jul 12 12:19:26.985 INFO kablam! 
Jul 12 12:19:26.985 INFO kablam! CMake Error: Could not open file for write in copy operation /source/chemfiles/include/chemfiles/config.hpp.tmp
Jul 12 12:19:26.985 INFO kablam! CMake Error: : System Error: Read-only file system
Jul 12 12:19:26.985 INFO kablam! CMake Error at chemfiles/CMakeLists.txt:77 (configure_file):
Jul 12 12:19:26.985 INFO kablam!   configure_file Problem configuring file
Jul 12 12:19:26.985 INFO kablam! 
Jul 12 12:19:26.985 INFO kablam! 
Jul 12 12:19:26.986 INFO kablam! CMake Warning (dev) in CMakeLists.txt:
Jul 12 12:19:26.986 INFO kablam!   No cmake_minimum_required command is present.  A line of code such as
Jul 12 12:19:26.986 INFO kablam! 
Jul 12 12:19:26.986 INFO kablam!     cmake_minimum_required(VERSION 3.5)
Jul 12 12:19:26.986 INFO kablam! 
Jul 12 12:19:26.986 INFO kablam!   should be added at the top of the file.  The version specified may be lower
Jul 12 12:19:26.986 INFO kablam!   if you wish to support older CMake versions for this project.  For more
Jul 12 12:19:26.986 INFO kablam!   information run "cmake --help-policy CMP0000".
Jul 12 12:19:26.986 INFO kablam! This warning is for project developers.  Use -Wno-dev to suppress it.
Jul 12 12:19:26.986 INFO kablam! 
Jul 12 12:19:26.986 INFO kablam! thread 'main' panicked at '
Jul 12 12:19:26.986 INFO kablam! command did not execute successfully, got: exit code: 1
Jul 12 12:19:26.986 INFO kablam! 
Jul 12 12:19:26.986 INFO kablam! build script failed, must exit now', /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.31/src/lib.rs:643:5
Jul 12 12:19:26.986 INFO kablam! stack backtrace:
Jul 12 12:19:26.986 INFO kablam!    0:     0x55b5c26590ae - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h384ae355f7caea4e
Jul 12 12:19:26.986 INFO kablam!                                at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49
Jul 12 12:19:26.987 INFO kablam!    1:     0x55b5c2664436 - std::sys_common::backtrace::print::h4bb52e1bee024bba
Jul 12 12:19:26.987 INFO kablam!                                at libstd/sys_common/backtrace.rs:71
Jul 12 12:19:26.987 INFO kablam!                                at libstd/sys_common/backtrace.rs:59
Jul 12 12:19:26.987 INFO kablam!    2:     0x55b5c265d8dd - std::panicking::default_hook::{{closure}}::hb7ba413df06fc0fe
Jul 12 12:19:26.987 INFO kablam!                                at libstd/panicking.rs:211
Jul 12 12:19:26.987 INFO kablam!    3:     0x55b5c265d650 - std::panicking::default_hook::h0d2752b2f723ae1b
Jul 12 12:19:26.987 INFO kablam!                                at libstd/panicking.rs:227
Jul 12 12:19:26.987 INFO kablam!    4:     0x55b5c265deec - std::panicking::rust_panic_with_hook::h5ab246e6d52e753b
Jul 12 12:19:26.987 INFO kablam!                                at libstd/panicking.rs:475
Jul 12 12:19:26.987 INFO kablam!    5:     0x55b5c265dae9 - std::panicking::continue_panic_fmt::hbc5be41dc11c760a
Jul 12 12:19:26.987 INFO kablam!                                at libstd/panicking.rs:390
Jul 12 12:19:26.987 INFO kablam!    6:     0x55b5c265da4d - std::panicking::begin_panic_fmt::ha1b16ae9609c44dd
Jul 12 12:19:26.987 INFO kablam!                                at libstd/panicking.rs:345
Jul 12 12:19:26.987 INFO kablam!    7:     0x55b5c25f2d21 - cmake::fail::hfad1146c29623e0f
Jul 12 12:19:26.987 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.31/src/lib.rs:643
Jul 12 12:19:26.987 INFO kablam!    8:     0x55b5c25f2660 - cmake::run::hd25c2ebac60f62d8
Jul 12 12:19:26.987 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.31/src/lib.rs:624
Jul 12 12:19:26.987 INFO kablam!    9:     0x55b5c25eeb54 - cmake::Config::build::hb906efab1f8ac568
Jul 12 12:19:26.987 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.31/src/lib.rs:485
Jul 12 12:19:26.988 INFO kablam!   10:     0x55b5c25eb235 - build_script_build::main::h11a515f59f7fa3c1
Jul 12 12:19:26.988 INFO kablam!                                at /source/build.rs:18
Jul 12 12:19:26.988 INFO kablam!   11:     0x55b5c25ec1df - std::rt::lang_start::{{closure}}::h45264f0efa2f39bf
Jul 12 12:19:26.988 INFO kablam!                                at /checkout/src/libstd/rt.rs:74
Jul 12 12:19:26.988 INFO kablam!   12:     0x55b5c265d982 - std::panicking::try::do_call::he078c96f91c45734
Jul 12 12:19:26.988 INFO kablam!                                at libstd/rt.rs:59
Jul 12 12:19:26.988 INFO kablam!                                at libstd/panicking.rs:310
Jul 12 12:19:26.988 INFO kablam!   13:     0x55b5c266f7e9 - __rust_maybe_catch_panic
Jul 12 12:19:26.988 INFO kablam!                                at libpanic_unwind/lib.rs:105
Jul 12 12:19:26.988 INFO kablam!   14:     0x55b5c2653d25 - std::rt::lang_start_internal::he059594c0b5de843
Jul 12 12:19:26.988 INFO kablam!                                at libstd/panicking.rs:289
Jul 12 12:19:26.988 INFO kablam!                                at libstd/panic.rs:392
Jul 12 12:19:26.988 INFO kablam!                                at libstd/rt.rs:58
Jul 12 12:19:26.988 INFO kablam!   15:     0x55b5c25ec1b7 - std::rt::lang_start::hef86831872ac6a27
Jul 12 12:19:26.988 INFO kablam!                                at /checkout/src/libstd/rt.rs:74
Jul 12 12:19:26.988 INFO kablam!   16:     0x55b5c25ebb79 - main
Jul 12 12:19:26.988 INFO kablam!   17:     0x7f9cc0c8882f - __libc_start_main
Jul 12 12:19:26.988 INFO kablam!   18:     0x55b5c25ea838 - _start
Jul 12 12:19:26.988 INFO kablam!   19:                0x0 - <unknown>
Jul 12 12:19:26.989 INFO kablam! 
Jul 12 12:19:26.991 INFO kablam! su: No module specific data is present
Jul 12 12:19:27.577 INFO running `"docker" "rm" "-f" "a48a01f4851c68bd4b7febcc82c0e2798bac219d169f650b5599b28e3d829364"`
Jul 12 12:19:27.742 INFO blam! a48a01f4851c68bd4b7febcc82c0e2798bac219d169f650b5599b28e3d829364