[INFO] cloning repository https://github.com/nvbgh/bio_mcp_server
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nvbgh/bio_mcp_server" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnvbgh%2Fbio_mcp_server", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnvbgh%2Fbio_mcp_server'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 811b47bcfe92ebf5e15403e1ada068d82b7a5efd
[INFO] checking nvbgh/bio_mcp_server against f1c52bf13c990fc425c542cc90a0396a87db24ba for pr-164812
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnvbgh%2Fbio_mcp_server" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/nvbgh/bio_mcp_server
[INFO] finished tweaking git repo https://github.com/nvbgh/bio_mcp_server
[INFO] tweaked toml for git repo https://github.com/nvbgh/bio_mcp_server written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/nvbgh/bio_mcp_server on toolchain f1c52bf13c990fc425c542cc90a0396a87db24ba
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f1c52bf13c990fc425c542cc90a0396a87db24ba" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/nvbgh/bio_mcp_server already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f1c52bf13c990fc425c542cc90a0396a87db24ba" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c0af3998e971868164375a7dfb646c9933ddd1a3bdb00fa2041266763dc1eeab" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302
[INFO] running `Command { std: "docker" "start" "ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302" "/opt/rustwide/cargo-home/bin/cargo" "+f1c52bf13c990fc425c542cc90a0396a87db24ba" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302" "/opt/rustwide/cargo-home/bin/cargo" "+f1c52bf13c990fc425c542cc90a0396a87db24ba" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]     Checking memchr v2.7.5
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking cfg-if v1.0.1
[INFO] [stderr]    Compiling lock_api v0.4.13
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]     Checking regex-syntax v0.8.5
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking log v0.4.27
[INFO] [stderr]     Checking overload v0.1.1
[INFO] [stderr]     Checking tracing-core v0.1.34
[INFO] [stderr]    Compiling serde_json v1.0.141
[INFO] [stderr]     Checking predicates-core v1.0.9
[INFO] [stderr]     Checking nu-ansi-term v0.46.0
[INFO] [stderr]     Checking thread_local v1.1.9
[INFO] [stderr]     Checking termtree v0.5.1
[INFO] [stderr]     Checking normalize-line-endings v0.3.0
[INFO] [stderr]     Checking iana-time-zone v0.1.63
[INFO] [stderr]     Checking difflib v0.4.0
[INFO] [stderr]     Checking itoa v1.0.15
[INFO] [stderr]    Compiling assert_cmd v2.0.17
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking anstyle v1.0.11
[INFO] [stderr]     Checking ryu v1.0.20
[INFO] [stderr]     Checking predicates-tree v1.0.12
[INFO] [stderr]     Checking tracing-subscriber v0.3.19
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]     Checking signal-hook-registry v1.4.5
[INFO] [stderr]     Checking mio v1.0.4
[INFO] [stderr]     Checking socket2 v0.6.0
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]     Checking parking_lot v0.12.4
[INFO] [stderr]     Checking float-cmp v0.10.0
[INFO] [stderr]     Checking chrono v0.4.41
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]     Checking regex v1.11.1
[INFO] [stderr]     Checking bstr v1.12.0
[INFO] [stderr]     Checking predicates v3.1.3
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling tokio-macros v2.5.0
[INFO] [stderr]    Compiling tracing-attributes v0.1.30
[INFO] [stderr]     Checking tokio v1.47.0
[INFO] [stderr]     Checking tracing v0.1.41
[INFO] [stderr]     Checking bio_mcp_server v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused dependency `chrono`
[INFO] [stderr]  --> Cargo.toml:2:1
[INFO] [stderr]   |
[INFO] [stderr] 2 | chrono = "0.4"
[INFO] [stderr]   | ^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `chrono`
[INFO] [stderr] help: to still use for development builds, move to `dev-dependencies`
[INFO] [stderr] warning: unused dependency `tokio`
[INFO] [stderr]   --> Cargo.toml:11:15
[INFO] [stderr]    |
[INFO] [stderr] 11 | [dependencies.tokio]
[INFO] [stderr]    |               ^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `tokio`
[INFO] [stderr] warning: unused dependency `tracing`
[INFO] [stderr]  --> Cargo.toml:4:1
[INFO] [stderr]   |
[INFO] [stderr] 4 | tracing = "0.1"
[INFO] [stderr]   | ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: consider removing the dependency on `tracing`
[INFO] [stderr] warning: unused dependency `tracing-subscriber`
[INFO] [stderr]  --> Cargo.toml:5:1
[INFO] [stderr]   |
[INFO] [stderr] 5 | tracing-subscriber = "0.3"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: consider removing the dependency on `tracing-subscriber`
[INFO] [stderr] warning: `bio_mcp_server` (manifest) generated 4 warnings
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 21.78s
[INFO] running `Command { std: "docker" "inspect" "ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302", kill_on_drop: false }`
[INFO] [stdout] ecdac58efa5a32623bcabf41584ccb74dd4f70c5f2ab84f62d0f018a88392302
