[INFO] cloning repository https://github.com/broadinstitute/gnomad-lr
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/broadinstitute/gnomad-lr" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 09b864fb92ccdc5ab6d408f7b064825e0a6d3e00
[INFO] checking broadinstitute/gnomad-lr against 846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9 for pr-164812
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-3-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/broadinstitute/gnomad-lr
[INFO] finished tweaking git repo https://github.com/broadinstitute/gnomad-lr
[INFO] tweaked toml for git repo https://github.com/broadinstitute/gnomad-lr written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/broadinstitute/gnomad-lr on toolchain 846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/broadinstitute/gnomad-lr already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/broadinstitute/genohype.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded tracing-log v0.2.0
[INFO] [stderr]   Downloaded log v0.4.30
[INFO] [stderr]   Downloaded id-arena v2.3.0
[INFO] [stderr]   Downloaded system-configuration-sys v0.5.0
[INFO] [stderr]   Downloaded valuable v0.1.1
[INFO] [stderr]   Downloaded displaydoc v0.2.6
[INFO] [stderr]   Downloaded winreg v0.50.0
[INFO] [stderr]   Downloaded matchers v0.2.0
[INFO] [stderr]   Downloaded tokio-macros v2.7.0
[INFO] [stderr]   Downloaded zmij v1.0.21
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[INFO] [stderr]   Downloaded noodles-tabix v0.50.0
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[INFO] [stderr]   Downloaded futures-sink v0.3.32
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[INFO] [stderr]   Downloaded futures-io v0.3.32
[INFO] [stderr]   Downloaded wasm-bindgen-futures v0.4.72
[INFO] [stderr]   Downloaded potential_utf v0.1.5
[INFO] [stderr]   Downloaded system-configuration v0.5.1
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[INFO] [stderr]   Downloaded noodles v0.91.0
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.122
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[INFO] [stderr]   Downloaded hyper-rustls v0.24.2
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[INFO] [stderr]   Downloaded quote v1.0.45
[INFO] [stderr]   Downloaded bytes v1.11.1
[INFO] [stderr]   Downloaded futures-core v0.3.32
[INFO] [stderr]   Downloaded simd-adler32 v0.3.9
[INFO] [stderr]   Downloaded rustls-pemfile v1.0.4
[INFO] [stderr]   Downloaded ipnet v2.12.0
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[INFO] [stderr]   Downloaded serde_core v1.0.228
[INFO] [stderr]   Downloaded serde_derive v1.0.228
[INFO] [stderr]   Downloaded rustversion v1.0.22
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[INFO] [stderr]   Downloaded tinystr v0.8.3
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[INFO] [stderr]   Downloaded getrandom v0.3.4
[INFO] [stderr]   Downloaded wit-bindgen v0.57.1
[INFO] [stderr]   Downloaded core-foundation v0.9.4
[INFO] [stderr]   Downloaded noodles-bgzf v0.36.0
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[INFO] [stderr]   Downloaded bit-vec v0.8.0
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[INFO] [stderr]   Downloaded getrandom v0.4.2
[INFO] [stderr]   Downloaded wasm-metadata v0.244.0
[INFO] [stderr]   Downloaded axum-core v0.4.5
[INFO] [stderr]   Downloaded async-trait v0.1.89
[INFO] [stderr]   Downloaded pkg-config v0.3.33
[INFO] [stderr]   Downloaded arrow-data v53.4.1
[INFO] [stderr]   Downloaded rand_core v0.9.5
[INFO] [stderr]   Downloaded unicode-ident v1.0.24
[INFO] [stderr]   Downloaded proc-macro2 v1.0.106
[INFO] [stderr]   Downloaded sharded-slab v0.1.7
[INFO] [stderr]   Downloaded memchr v2.8.1
[INFO] [stderr]   Downloaded socket2 v0.6.4
[INFO] [stderr]   Downloaded serde v1.0.228
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.122
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[INFO] [stderr]   Downloaded yoke v0.8.2
[INFO] [stderr]   Downloaded icu_provider v2.2.0
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[INFO] [stderr]   Downloaded icu_collections v2.2.0
[INFO] [stderr]   Downloaded icu_normalizer v2.2.0
[INFO] [stderr]   Downloaded icu_normalizer_data v2.2.0
[INFO] [stderr]   Downloaded jobserver v0.1.34
[INFO] [stderr]   Downloaded wit-bindgen v0.51.0
[INFO] [stderr]   Downloaded wit-bindgen-rust v0.51.0
[INFO] [stderr]   Downloaded wit-bindgen-core v0.51.0
[INFO] [stderr]   Downloaded zstd-safe v7.2.1
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[INFO] [stderr]   Downloaded const-random-macro v0.1.16
[INFO] [stderr]   Downloaded rustls-pemfile v2.2.0
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[INFO] [stderr]   Downloaded cc v1.2.63
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[INFO] [stderr]   Downloaded flate2 v1.1.9
[INFO] [stderr]   Downloaded serde_path_to_error v0.1.20
[INFO] [stderr]   Downloaded android_system_properties v0.1.5
[INFO] [stderr]   Downloaded ref-cast v1.0.25
[INFO] [stderr]   Downloaded dirs v5.0.1
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[INFO] [stderr]   Downloaded zerotrie v0.2.4
[INFO] [stderr]   Downloaded noodles-vcf v0.74.0
[INFO] [stderr]   Downloaded memmap2 v0.9.10
[INFO] [stderr]   Downloaded vsimd v0.8.0
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[INFO] [stderr]   Downloaded serde_json v1.0.150
[INFO] [stderr]   Downloaded reqwest v0.11.27
[INFO] [stderr]   Downloaded js-sys v0.3.99
[INFO] [stderr]   Downloaded zerovec v0.11.6
[INFO] [stderr]   Downloaded tokio-util v0.7.18
[INFO] [stderr]   Downloaded wasip3 v0.4.0+wasi-0.3.0-rc-2026-01-06
[INFO] [stderr]   Downloaded futures-executor v0.3.32
[INFO] [stderr]   Downloaded console v0.15.11
[INFO] [stderr]   Downloaded tracing-subscriber v0.3.23
[INFO] [stderr]   Downloaded wasip2 v1.0.3+wasi-0.2.9
[INFO] [stderr]   Downloaded tiny-keccak v2.0.2
[INFO] [stderr]   Downloaded thiserror-impl v2.0.18
[INFO] [stderr]   Downloaded quinn-udp v0.5.14
[INFO] [stderr]   Downloaded windows-targets v0.53.5
[INFO] [stderr]   Downloaded aho-corasick v1.1.4
[INFO] [stderr]   Downloaded futures-util v0.3.32
[INFO] [stderr]   Downloaded icu_properties_data v2.2.0
[INFO] [stderr]   Downloaded hyper v0.14.32
[INFO] [stderr]   Downloaded fraction v0.15.4
[INFO] [stderr]   Downloaded libredox v0.1.17
[INFO] [stderr]   Downloaded rand v0.8.6
[INFO] [stderr]   Downloaded num-rational v0.4.2
[INFO] [stderr]   Downloaded openssl-probe v0.2.1
[INFO] [stderr]   Downloaded redox_users v0.4.6
[INFO] [stderr]   Downloaded syn v2.0.117
[INFO] [stderr]   Downloaded wit-component v0.244.0
[INFO] [stderr]   Downloaded futures v0.3.32
[INFO] [stderr]   Downloaded arrow v53.4.1
[INFO] [stderr]   Downloaded arrow-csv v53.4.1
[INFO] [stderr]   Downloaded bstr v1.12.1
[INFO] [stderr]   Downloaded num v0.4.3
[INFO] [stderr]   Downloaded itertools v0.13.0
[INFO] [stderr]   Downloaded outref v0.5.2
[INFO] [stderr]   Downloaded arrow-string v53.4.1
[INFO] [stderr]   Downloaded regex-syntax v0.8.10
[INFO] [stderr]   Downloaded moka v0.12.15
[INFO] [stderr]   Downloaded event-listener v5.4.1
[INFO] [stderr]   Downloaded async-lock v3.4.2
[INFO] [stderr]   Downloaded uuid-simd v0.8.0
[INFO] [stderr]   Downloaded arrow-row v53.4.1
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.6
[INFO] [stderr]   Downloaded referencing v0.27.1
[INFO] [stderr]   Downloaded indicatif v0.17.11
[INFO] [stderr]   Downloaded arrow-arith v53.4.1
[INFO] [stderr]   Downloaded clap_derive v4.6.1
[INFO] [stderr]   Downloaded portable-atomic v1.13.1
[INFO] [stderr]   Downloaded regex-automata v0.4.14
[INFO] [stderr]   Downloaded libc v0.2.186
[INFO] [stderr]   Downloaded web-sys v0.3.99
[INFO] [stderr]   Downloaded fluent-uri v0.3.2
[INFO] [stderr]   Downloaded dirs-sys v0.4.1
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[INFO] [stderr]   Downloaded seq-macro v0.3.6
[INFO] [stderr]   Downloaded winapi-util v0.1.11
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[INFO] [stderr]   Downloaded clap_builder v4.6.0
[INFO] [stderr]   Downloaded num-cmp v0.1.0
[INFO] [stderr]   Downloaded encoding_rs v0.8.35
[INFO] [stderr]   Downloaded twox-hash v1.6.3
[INFO] [stderr]   Downloaded const-random v0.1.18
[INFO] [stderr]   Downloaded bit-set v0.8.0
[INFO] [stderr]   Downloaded unicode-width v0.2.2
[INFO] [stderr]   Downloaded hyper-rustls v0.27.9
[INFO] [stderr]   Downloaded jsonschema v0.27.1
[INFO] [stderr]   Downloaded http v1.4.1
[INFO] [stderr]   Downloaded integer-encoding v3.0.4
[INFO] [stderr]   Downloaded flatbuffers v24.12.23
[INFO] [stderr]   Downloaded borrow-or-share v0.2.4
[INFO] [stderr]   Downloaded clap_lex v1.1.0
[INFO] [stderr]   Downloaded lru v0.12.5
[INFO] [stderr]   Downloaded csv-core v0.1.13
[INFO] [stderr]   Downloaded number_prefix v0.4.0
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[INFO] [stderr]   Downloaded snap v1.1.1
[INFO] [stderr]   Downloaded clap v4.6.1
[INFO] [stderr]   Downloaded windows-core v0.52.0
[INFO] [stderr]   Downloaded android-tzdata v0.1.1
[INFO] [stderr]   Downloaded static_assertions v1.1.0
[INFO] [stderr]   Downloaded ordered-float v2.10.1
[INFO] [stderr]   Downloaded security-framework-sys v2.17.0
[INFO] [stderr]   Downloaded num-complex v0.4.6
[INFO] [stderr]   Downloaded lexical-core v1.0.6
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[INFO] [stderr]   Downloaded twox-hash v2.1.2
[INFO] [stderr]   Downloaded rustls-pki-types v1.14.1
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[INFO] [stderr]   Downloaded matchit v0.7.3
[INFO] [stderr]   Downloaded thrift v0.17.0
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[INFO] [stderr]   Downloaded half v2.7.1
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[INFO] [stderr]   Downloaded tokio-rustls v0.26.4
[INFO] [stderr]   Downloaded schannel v0.1.29
[INFO] [stderr]   Downloaded wasmparser v0.244.0
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[INFO] [stderr]   Downloaded arrow-select v53.4.1
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[INFO] [stderr]   Downloaded security-framework v3.7.0
[INFO] [stderr]   Downloaded tinyvec v1.11.0
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.6
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[INFO] [stderr]   Downloaded lexical-write-float v1.0.6
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[INFO] [stderr]   Downloaded rand v0.9.4
[INFO] [stderr]   Downloaded fancy-regex v0.14.0
[INFO] [stderr]   Downloaded ntapi v0.4.3
[INFO] [stderr]   Downloaded hyper-util v0.1.20
[INFO] [stderr]   Downloaded hyper v1.10.0
[INFO] [stderr]   Downloaded arrow-cast v53.4.1
[INFO] [stderr]   Downloaded lexical-util v1.0.7
[INFO] [stderr]   Downloaded snafu v0.8.9
[INFO] [stderr]   Downloaded rustls-webpki v0.103.13
[INFO] [stderr]   Downloaded rayon v1.12.0
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[INFO] [stderr]   Downloaded axum v0.7.9
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.6
[INFO] [stderr]   Downloaded brotli-decompressor v4.0.3
[INFO] [stderr]   Downloaded arrow-array v53.4.1
[INFO] [stderr]   Downloaded quick-xml v0.37.5
[INFO] [stderr]   Downloaded chrono v0.4.39
[INFO] [stderr]   Downloaded object_store v0.11.2
[INFO] [stderr]   Downloaded quinn-proto v0.11.14
[INFO] [stderr]   Downloaded zerocopy v0.8.49
[INFO] [stderr]   Downloaded rustls v0.23.40
[INFO] [stderr]   Downloaded parquet v53.4.1
[INFO] [stderr]   Downloaded zstd-sys v2.0.13+zstd.1.5.6
[INFO] [stderr]   Downloaded windows_x86_64_msvc v0.53.1
[INFO] [stderr]   Downloaded windows_x86_64_gnullvm v0.53.1
[INFO] [stderr]   Downloaded windows_aarch64_msvc v0.53.1
[INFO] [stderr]   Downloaded windows_aarch64_gnullvm v0.53.1
[INFO] [stderr]   Downloaded csv v1.4.0
[INFO] [stderr]   Downloaded windows_x86_64_gnu v0.53.1
[INFO] [stderr]   Downloaded windows_i686_msvc v0.53.1
[INFO] [stderr]   Downloaded windows_i686_gnullvm v0.53.1
[INFO] [stderr]   Downloaded windows_i686_gnu v0.53.1
[INFO] [stderr]   Downloaded brotli v7.0.0
[INFO] [stderr]   Downloaded windows v0.52.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c0af3998e971868164375a7dfb646c9933ddd1a3bdb00fa2041266763dc1eeab" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stderr] Error response from daemon: write /var/lib/containerd/io.containerd.metadata.v1.bolt/meta.db: no space left on device


sandbox container could not be created: command failed: exit status: 1

Error response from daemon: write /var/lib/containerd/io.containerd.metadata.v1.bolt/meta.db: no space left on device

Caused by:
    command failed: exit status: 1
    
    Error response from daemon: write /var/lib/containerd/io.containerd.metadata.v1.bolt/meta.db: no space left on device