[INFO] cloning repository https://github.com/broadinstitute/gnomad-lr [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/broadinstitute/gnomad-lr" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 09b864fb92ccdc5ab6d408f7b064825e0a6d3e00 [INFO] checking broadinstitute/gnomad-lr against 846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9 for pr-164812 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-3-tc1/source/.cargo/config.toml [INFO] started tweaking git repo https://github.com/broadinstitute/gnomad-lr [INFO] finished tweaking git repo https://github.com/broadinstitute/gnomad-lr [INFO] tweaked toml for git repo https://github.com/broadinstitute/gnomad-lr written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/broadinstitute/gnomad-lr on toolchain 846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/broadinstitute/gnomad-lr already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/broadinstitute/genohype.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded tracing-log v0.2.0 [INFO] [stderr] Downloaded log v0.4.30 [INFO] [stderr] Downloaded id-arena v2.3.0 [INFO] [stderr] Downloaded system-configuration-sys v0.5.0 [INFO] [stderr] Downloaded valuable v0.1.1 [INFO] [stderr] Downloaded displaydoc v0.2.6 [INFO] [stderr] Downloaded winreg v0.50.0 [INFO] [stderr] Downloaded matchers v0.2.0 [INFO] [stderr] Downloaded tokio-macros v2.7.0 [INFO] [stderr] Downloaded zmij v1.0.21 [INFO] [stderr] Downloaded futures-macro v0.3.32 [INFO] [stderr] Downloaded noodles-tabix v0.50.0 [INFO] [stderr] Downloaded anyhow v1.0.102 [INFO] [stderr] Downloaded bitflags v2.11.1 [INFO] [stderr] Downloaded futures-task v0.3.32 [INFO] [stderr] Downloaded zerofrom-derive v0.1.7 [INFO] [stderr] Downloaded yoke-derive v0.8.2 [INFO] [stderr] Downloaded noodles-csi v0.44.0 [INFO] [stderr] Downloaded leb128fmt v0.1.0 [INFO] [stderr] Downloaded sync_wrapper v0.1.2 [INFO] [stderr] Downloaded thread_local v1.1.9 [INFO] [stderr] Downloaded wasm-bindgen-macro v0.2.122 [INFO] [stderr] Downloaded find-msvc-tools v0.1.9 [INFO] [stderr] Downloaded noodles-core v0.16.0 [INFO] [stderr] Downloaded rustc-hash v2.1.2 [INFO] [stderr] Downloaded futures-sink v0.3.32 [INFO] [stderr] Downloaded wit-bindgen-rust-macro v0.51.0 [INFO] [stderr] Downloaded cfg-if v1.0.4 [INFO] [stderr] Downloaded futures-io v0.3.32 [INFO] [stderr] Downloaded wasm-bindgen-futures v0.4.72 [INFO] [stderr] Downloaded potential_utf v0.1.5 [INFO] [stderr] Downloaded system-configuration v0.5.1 [INFO] [stderr] Downloaded http-body v0.4.6 [INFO] [stderr] Downloaded noodles v0.91.0 [INFO] [stderr] Downloaded wasm-bindgen-shared v0.2.122 [INFO] [stderr] Downloaded zerovec-derive v0.11.3 [INFO] [stderr] Downloaded writeable v0.6.3 [INFO] [stderr] Downloaded hyper-rustls v0.24.2 [INFO] [stderr] Downloaded tagptr v0.2.0 [INFO] [stderr] Downloaded quote v1.0.45 [INFO] [stderr] Downloaded bytes v1.11.1 [INFO] [stderr] Downloaded futures-core v0.3.32 [INFO] [stderr] 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v0.51.0 [INFO] [stderr] Downloaded zstd-safe v7.2.1 [INFO] [stderr] Downloaded zerocopy-derive v0.8.49 [INFO] [stderr] Downloaded const-random-macro v0.1.16 [INFO] [stderr] Downloaded rustls-pemfile v2.2.0 [INFO] [stderr] Downloaded humantime v2.3.0 [INFO] [stderr] Downloaded bytecount v0.6.9 [INFO] [stderr] Downloaded cc v1.2.63 [INFO] [stderr] Downloaded base64 v0.21.7 [INFO] [stderr] Downloaded indexmap v2.14.0 [INFO] [stderr] Downloaded flate2 v1.1.9 [INFO] [stderr] Downloaded serde_path_to_error v0.1.20 [INFO] [stderr] Downloaded android_system_properties v0.1.5 [INFO] [stderr] Downloaded ref-cast v1.0.25 [INFO] [stderr] Downloaded dirs v5.0.1 [INFO] [stderr] Downloaded mio v1.2.1 [INFO] [stderr] Downloaded zerotrie v0.2.4 [INFO] [stderr] Downloaded noodles-vcf v0.74.0 [INFO] [stderr] Downloaded memmap2 v0.9.10 [INFO] [stderr] Downloaded vsimd v0.8.0 [INFO] [stderr] Downloaded arrow-ord v53.4.1 [INFO] [stderr] Downloaded serde_json v1.0.150 [INFO] [stderr] Downloaded reqwest v0.11.27 [INFO] [stderr] Downloaded js-sys v0.3.99 [INFO] [stderr] Downloaded zerovec v0.11.6 [INFO] [stderr] Downloaded tokio-util v0.7.18 [INFO] [stderr] Downloaded wasip3 v0.4.0+wasi-0.3.0-rc-2026-01-06 [INFO] [stderr] Downloaded futures-executor v0.3.32 [INFO] [stderr] Downloaded console v0.15.11 [INFO] [stderr] Downloaded tracing-subscriber v0.3.23 [INFO] [stderr] Downloaded wasip2 v1.0.3+wasi-0.2.9 [INFO] [stderr] Downloaded tiny-keccak v2.0.2 [INFO] [stderr] Downloaded thiserror-impl v2.0.18 [INFO] [stderr] Downloaded quinn-udp v0.5.14 [INFO] [stderr] Downloaded windows-targets v0.53.5 [INFO] [stderr] Downloaded aho-corasick v1.1.4 [INFO] [stderr] Downloaded futures-util v0.3.32 [INFO] [stderr] Downloaded icu_properties_data v2.2.0 [INFO] [stderr] Downloaded hyper v0.14.32 [INFO] [stderr] Downloaded fraction v0.15.4 [INFO] [stderr] Downloaded libredox v0.1.17 [INFO] [stderr] Downloaded rand v0.8.6 [INFO] [stderr] Downloaded num-rational v0.4.2 [INFO] [stderr] Downloaded 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integer-encoding v3.0.4 [INFO] [stderr] Downloaded flatbuffers v24.12.23 [INFO] [stderr] Downloaded borrow-or-share v0.2.4 [INFO] [stderr] Downloaded clap_lex v1.1.0 [INFO] [stderr] Downloaded lru v0.12.5 [INFO] [stderr] Downloaded csv-core v0.1.13 [INFO] [stderr] Downloaded number_prefix v0.4.0 [INFO] [stderr] Downloaded regex v1.12.3 [INFO] [stderr] Downloaded wit-parser v0.244.0 [INFO] [stderr] Downloaded snap v1.1.1 [INFO] [stderr] Downloaded clap v4.6.1 [INFO] [stderr] Downloaded windows-core v0.52.0 [INFO] [stderr] Downloaded android-tzdata v0.1.1 [INFO] [stderr] Downloaded static_assertions v1.1.0 [INFO] [stderr] Downloaded ordered-float v2.10.1 [INFO] [stderr] Downloaded security-framework-sys v2.17.0 [INFO] [stderr] Downloaded num-complex v0.4.6 [INFO] [stderr] Downloaded lexical-core v1.0.6 [INFO] [stderr] Downloaded snafu-derive v0.8.9 [INFO] [stderr] Downloaded zeroize v1.8.2 [INFO] [stderr] Downloaded thiserror v2.0.18 [INFO] [stderr] Downloaded either v1.16.0 [INFO] [stderr] Downloaded twox-hash v2.1.2 [INFO] [stderr] Downloaded rustls-pki-types v1.14.1 [INFO] [stderr] Downloaded rustls-native-certs v0.8.3 [INFO] [stderr] Downloaded email_address v0.2.9 [INFO] [stderr] Downloaded prettyplease v0.2.37 [INFO] [stderr] Downloaded matchit v0.7.3 [INFO] [stderr] Downloaded thrift v0.17.0 [INFO] [stderr] Downloaded lz4_flex v0.11.6 [INFO] [stderr] Downloaded half v2.7.1 [INFO] [stderr] Downloaded arrow-schema v53.4.1 [INFO] [stderr] Downloaded tokio-rustls v0.26.4 [INFO] [stderr] Downloaded schannel v0.1.29 [INFO] [stderr] Downloaded wasmparser v0.244.0 [INFO] [stderr] Downloaded sysinfo v0.30.13 [INFO] [stderr] Downloaded rayon-core v1.13.0 [INFO] [stderr] Downloaded arrow-select v53.4.1 [INFO] [stderr] Downloaded arrow-buffer v53.4.1 [INFO] [stderr] Downloaded arrow-ipc v53.4.1 [INFO] [stderr] Downloaded security-framework v3.7.0 [INFO] [stderr] Downloaded tinyvec v1.11.0 [INFO] [stderr] Downloaded lexical-write-integer v1.0.6 [INFO] [stderr] Downloaded wasm-encoder v0.244.0 [INFO] [stderr] Downloaded lexical-write-float v1.0.6 [INFO] [stderr] Downloaded quinn v0.11.9 [INFO] [stderr] Downloaded rand v0.9.4 [INFO] [stderr] Downloaded fancy-regex v0.14.0 [INFO] [stderr] Downloaded ntapi v0.4.3 [INFO] [stderr] Downloaded hyper-util v0.1.20 [INFO] [stderr] Downloaded hyper v1.10.0 [INFO] [stderr] Downloaded arrow-cast v53.4.1 [INFO] [stderr] Downloaded lexical-util v1.0.7 [INFO] [stderr] Downloaded snafu v0.8.9 [INFO] [stderr] Downloaded rustls-webpki v0.103.13 [INFO] [stderr] Downloaded rayon v1.12.0 [INFO] [stderr] Downloaded h2 v0.4.14 [INFO] [stderr] Downloaded axum v0.7.9 [INFO] [stderr] Downloaded lexical-parse-float v1.0.6 [INFO] [stderr] Downloaded brotli-decompressor v4.0.3 [INFO] [stderr] Downloaded arrow-array v53.4.1 [INFO] [stderr] Downloaded quick-xml v0.37.5 [INFO] [stderr] Downloaded chrono v0.4.39 [INFO] [stderr] Downloaded object_store v0.11.2 [INFO] [stderr] Downloaded quinn-proto v0.11.14 [INFO] [stderr] Downloaded zerocopy v0.8.49 [INFO] [stderr] Downloaded rustls v0.23.40 [INFO] [stderr] Downloaded parquet v53.4.1 [INFO] [stderr] Downloaded zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Downloaded windows_x86_64_msvc v0.53.1 [INFO] [stderr] Downloaded windows_x86_64_gnullvm v0.53.1 [INFO] [stderr] Downloaded windows_aarch64_msvc v0.53.1 [INFO] [stderr] Downloaded windows_aarch64_gnullvm v0.53.1 [INFO] [stderr] Downloaded csv v1.4.0 [INFO] [stderr] Downloaded windows_x86_64_gnu v0.53.1 [INFO] [stderr] Downloaded windows_i686_msvc v0.53.1 [INFO] [stderr] Downloaded windows_i686_gnullvm v0.53.1 [INFO] [stderr] Downloaded windows_i686_gnu v0.53.1 [INFO] [stderr] Downloaded brotli v7.0.0 [INFO] [stderr] Downloaded windows v0.52.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c0af3998e971868164375a7dfb646c9933ddd1a3bdb00fa2041266763dc1eeab" "sleep" "infinity", kill_on_drop: false }` [INFO] [stderr] Error response from daemon: write /var/lib/containerd/io.containerd.metadata.v1.bolt/meta.db: no space left on device sandbox container could not be created: command failed: exit status: 1 Error response from daemon: write /var/lib/containerd/io.containerd.metadata.v1.bolt/meta.db: no space left on device Caused by: command failed: exit status: 1 Error response from daemon: write /var/lib/containerd/io.containerd.metadata.v1.bolt/meta.db: no space left on device