[INFO] cloning repository https://github.com/sounkou-bioinfo/duckvep-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sounkou-bioinfo/duckvep-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsounkou-bioinfo%2Fduckvep-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsounkou-bioinfo%2Fduckvep-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1f021e266ef5100059f05f64f29ca5fa2d1af41b
[INFO] checking sounkou-bioinfo/duckvep-rs/1f021e266ef5100059f05f64f29ca5fa2d1af41b against 0cefa27fe3deee26fc98ee44249406358d9f0d26 for pr-164789
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsounkou-bioinfo%2Fduckvep-rs" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-3-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/sounkou-bioinfo/duckvep-rs
[INFO] removed 0 missing examples
[INFO] finished tweaking git repo https://github.com/sounkou-bioinfo/duckvep-rs
[INFO] tweaked toml for git repo https://github.com/sounkou-bioinfo/duckvep-rs written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sounkou-bioinfo/duckvep-rs on toolchain 0cefa27fe3deee26fc98ee44249406358d9f0d26
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0cefa27fe3deee26fc98ee44249406358d9f0d26" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sounkou-bioinfo/duckvep-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0cefa27fe3deee26fc98ee44249406358d9f0d26" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `fastvep-cache`
[INFO] [stderr]   --> Cargo.toml:79:25
[INFO] [stderr]    |
[INFO] [stderr] 79 | [workspace.dependencies.fastvep-cache]
[INFO] [stderr]    |                         ^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `fastvep-cache`
[INFO] [stderr] warning: unused workspace dependency `fastvep-consequence`
[INFO] [stderr]   --> Cargo.toml:82:25
[INFO] [stderr]    |
[INFO] [stderr] 82 | [workspace.dependencies.fastvep-consequence]
[INFO] [stderr]    |                         ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `fastvep-consequence`
[INFO] [stderr] warning: unused workspace dependency `fastvep-hgvs`
[INFO] [stderr]   --> Cargo.toml:91:25
[INFO] [stderr]    |
[INFO] [stderr] 91 | [workspace.dependencies.fastvep-hgvs]
[INFO] [stderr]    |                         ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `fastvep-hgvs`
[INFO] [stderr] warning: unused workspace dependency `lru`
[INFO] [stderr]   --> Cargo.toml:67:1
[INFO] [stderr]    |
[INFO] [stderr] 67 | lru = "0.12"
[INFO] [stderr]    | ^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `lru`
[INFO] [stderr] warning: unused workspace dependency `rayon`
[INFO] [stderr]   --> Cargo.toml:73:1
[INFO] [stderr]    |
[INFO] [stderr] 73 | rayon = "1.10"
[INFO] [stderr]    | ^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rayon`
[INFO] [stderr] warning: unused field `description` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:99:1
[INFO] [stderr]    |
[INFO] [stderr] 99 | description = "Vendored fastVEP crate (Apache-2.0, Huang-lab/fastVEP)"
[INFO] [stderr]    | ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_package_fields` is set to `warn` by default
[INFO] [stderr] help: consider removing the field `workspace.package.description`
[INFO] [stderr] warning: workspace (manifest) generated 6 warnings
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded thrift v0.17.0
[INFO] [stderr]   Downloaded arrow-select v58.3.0
[INFO] [stderr]   Downloaded noodles v0.87.0
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded noodles-core v0.19.0
[INFO] [stderr]   Downloaded noodles-tabix v0.47.0
[INFO] [stderr]   Downloaded noodles-csi v0.41.0
[INFO] [stderr]   Downloaded noodles-tabix v0.61.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.34.0
[INFO] [stderr]   Downloaded noodles-csi v0.55.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.46.0
[INFO] [stderr]   Downloaded arrow-data v58.3.0
[INFO] [stderr]   Downloaded arrow-schema v58.3.0
[INFO] [stderr]   Downloaded arrow-buffer v58.3.0
[INFO] [stderr]   Downloaded noodles-vcf v0.70.0
[INFO] [stderr]   Downloaded arrow-ipc v58.3.0
[INFO] [stderr]   Downloaded rust_decimal v1.42.0
[INFO] [stderr]   Downloaded zlib-rs v0.6.3
[INFO] [stderr]   Downloaded arrow-array v58.3.0
[INFO] [stderr]   Downloaded parquet v58.3.0
[INFO] [stderr]   Downloaded duckdb-loadable-macros v1.10503.1
[INFO] [stderr]   Downloaded arrow-string v58.3.0
[INFO] [stderr]   Downloaded arrow-json v58.3.0
[INFO] [stderr]   Downloaded duckdb v1.10503.1
[INFO] [stderr]   Downloaded arrow-row v58.3.0
[INFO] [stderr]   Downloaded arrow-ord v58.3.0
[INFO] [stderr]   Downloaded arrow v58.3.0
[INFO] [stderr]   Downloaded libduckdb-sys v1.10503.1
[INFO] [stderr]   Downloaded arrow-csv v58.3.0
[INFO] [stderr]   Downloaded arrow-cast v58.3.0
[INFO] [stderr]   Downloaded arrow-arith v58.3.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c0af3998e971868164375a7dfb646c9933ddd1a3bdb00fa2041266763dc1eeab" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca
[INFO] running `Command { std: "docker" "start" "224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca" "/opt/rustwide/cargo-home/bin/cargo" "+0cefa27fe3deee26fc98ee44249406358d9f0d26" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca" "/opt/rustwide/cargo-home/bin/cargo" "+0cefa27fe3deee26fc98ee44249406358d9f0d26" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `fastvep-cache`
[INFO] [stderr]   --> Cargo.toml:79:25
[INFO] [stderr]    |
[INFO] [stderr] 79 | [workspace.dependencies.fastvep-cache]
[INFO] [stderr]    |                         ^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `fastvep-cache`
[INFO] [stderr] warning: unused workspace dependency `fastvep-consequence`
[INFO] [stderr]   --> Cargo.toml:82:25
[INFO] [stderr]    |
[INFO] [stderr] 82 | [workspace.dependencies.fastvep-consequence]
[INFO] [stderr]    |                         ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `fastvep-consequence`
[INFO] [stderr] warning: unused workspace dependency `fastvep-hgvs`
[INFO] [stderr]   --> Cargo.toml:91:25
[INFO] [stderr]    |
[INFO] [stderr] 91 | [workspace.dependencies.fastvep-hgvs]
[INFO] [stderr]    |                         ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `fastvep-hgvs`
[INFO] [stderr] warning: unused workspace dependency `lru`
[INFO] [stderr]   --> Cargo.toml:67:1
[INFO] [stderr]    |
[INFO] [stderr] 67 | lru = "0.12"
[INFO] [stderr]    | ^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `lru`
[INFO] [stderr] warning: unused workspace dependency `rayon`
[INFO] [stderr]   --> Cargo.toml:73:1
[INFO] [stderr]    |
[INFO] [stderr] 73 | rayon = "1.10"
[INFO] [stderr]    | ^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `rayon`
[INFO] [stderr] warning: unused field `description` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:99:1
[INFO] [stderr]    |
[INFO] [stderr] 99 | description = "Vendored fastVEP crate (Apache-2.0, Huang-lab/fastVEP)"
[INFO] [stderr]    | ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_package_fields` is set to `warn` by default
[INFO] [stderr] help: consider removing the field `workspace.package.description`
[INFO] [stderr] warning: workspace (manifest) generated 6 warnings
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Checking arrow-schema v58.3.0
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling pin-project-lite v0.2.17
[INFO] [stderr]    Compiling bytes v1.11.1
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]    Compiling futures-core v0.3.32
[INFO] [stderr]     Checking zlib-rs v0.6.3
[INFO] [stderr]    Compiling writeable v0.6.3
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]    Compiling litemap v0.8.2
[INFO] [stderr]    Compiling mio v1.2.1
[INFO] [stderr]    Compiling socket2 v0.6.4
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]    Compiling memchr v2.8.1
[INFO] [stderr]    Compiling futures-sink v0.3.32
[INFO] [stderr]    Compiling icu_properties_data v2.2.0
[INFO] [stderr]    Compiling icu_normalizer_data v2.2.0
[INFO] [stderr]    Compiling cc v1.2.63
[INFO] [stderr]    Compiling zeroize v1.8.2
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]    Compiling tokio v1.52.3
[INFO] [stderr]    Compiling http v1.4.2
[INFO] [stderr]    Compiling rustls-pki-types v1.14.1
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling futures-task v0.3.32
[INFO] [stderr]    Compiling futures-io v0.3.32
[INFO] [stderr]    Compiling slab v0.4.12
[INFO] [stderr]    Compiling untrusted v0.9.0
[INFO] [stderr]    Compiling httparse v1.10.1
[INFO] [stderr]    Compiling futures-util v0.3.32
[INFO] [stderr]     Checking rustix v0.38.44
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
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[INFO] [stderr]    Compiling try-lock v0.2.5
[INFO] [stderr]    Compiling tower-service v0.3.3
[INFO] [stderr]    Compiling bitflags v2.13.0
[INFO] [stderr]    Compiling want v0.3.1
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]    Compiling flatbuffers v25.12.19
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling futures-channel v0.3.32
[INFO] [stderr]    Compiling tracing-core v0.1.36
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling atomic-waker v1.1.2
[INFO] [stderr]     Checking regex-syntax v0.8.10
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]    Compiling simd-adler32 v0.3.9
[INFO] [stderr]    Compiling subtle v2.6.1
[INFO] [stderr]    Compiling http-body v1.0.1
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling tracing v0.1.44
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling sync_wrapper v1.0.2
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling tower-layer v0.3.3
[INFO] [stderr]    Compiling log v0.4.32
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]    Compiling base64 v0.22.1
[INFO] [stderr]    Compiling ipnet v2.12.0
[INFO] [stderr]     Checking crossterm v0.28.1
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]     Checking noodles-bgzf v0.46.0
[INFO] [stderr]     Checking comfy-table v7.1.4
[INFO] [stderr]    Compiling webpki-roots v1.0.7
[INFO] [stderr]     Checking noodles-core v0.19.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]    Compiling ryu v1.0.23
[INFO] [stderr]    Compiling bumpalo v3.20.3
[INFO] [stderr]    Compiling indexmap v2.14.0
[INFO] [stderr]     Checking noodles-csi v0.55.0
[INFO] [stderr]    Compiling http-body-util v0.1.3
[INFO] [stderr]    Compiling zmij v1.0.21
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling zopfli v0.8.3
[INFO] [stderr]    Compiling filetime v0.2.29
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking noodles-bgzf v0.34.0
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]     Checking noodles-core v0.15.0
[INFO] [stderr]     Checking noodles-tabix v0.61.0
[INFO] [stderr]     Checking memmap2 v0.9.10
[INFO] [stderr]     Checking integer-encoding v3.0.4
[INFO] [stderr]     Checking noodles-csi v0.41.0
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]    Compiling rust_decimal v1.42.0
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking hashlink v0.10.0
[INFO] [stderr]     Checking cast v0.3.0
[INFO] [stderr]     Checking arc-swap v1.9.1
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking noodles-tabix v0.47.0
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]    Compiling xattr v1.6.1
[INFO] [stderr]     Checking noodles-vcf v0.70.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]    Compiling tar v0.4.46
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling zerocopy-derive v0.8.50
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]    Compiling displaydoc v0.2.6
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling rustls v0.23.40
[INFO] [stderr]    Compiling hyper v1.10.1
[INFO] [stderr]    Compiling zerofrom v0.1.8
[INFO] [stderr]    Compiling tower v0.5.3
[INFO] [stderr]    Compiling yoke v0.8.3
[INFO] [stderr]     Checking zerocopy v0.8.50
[INFO] [stderr]    Compiling zerotrie v0.2.4
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]    Compiling strum_macros v0.27.2
[INFO] [stderr]     Checking noodles v0.87.0
[INFO] [stderr]    Compiling zerovec v0.11.6
[INFO] [stderr]    Compiling zip v6.0.0
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]    Compiling darling v0.20.11
[INFO] [stderr]    Compiling duckdb-loadable-macros v1.10503.1
[INFO] [stderr]    Compiling tinystr v0.8.3
[INFO] [stderr]    Compiling potential_utf v0.1.5
[INFO] [stderr]    Compiling icu_collections v2.2.0
[INFO] [stderr]    Compiling hyper-util v0.1.20
[INFO] [stderr]    Compiling icu_locale_core v2.2.0
[INFO] [stderr]    Compiling rustls-webpki v0.103.13
[INFO] [stderr]     Checking strum v0.27.2
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking fastvep-core v0.2.0 (/opt/rustwide/workdir/vendor/fastvep-core)
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking fastvep-genome v0.2.0 (/opt/rustwide/workdir/vendor/fastvep-genome)
[INFO] [stderr]    Compiling icu_provider v2.2.0
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling icu_properties v2.2.0
[INFO] [stderr]    Compiling icu_normalizer v2.2.0
[INFO] [stderr]     Checking fastvep-cache v0.2.0 (/opt/rustwide/workdir/vendor/fastvep-cache)
[INFO] [stderr]     Checking fastvep-hgvs v0.2.0 (/opt/rustwide/workdir/vendor/fastvep-hgvs)
[INFO] [stderr]     Checking fastvep-consequence v0.2.0 (/opt/rustwide/workdir/vendor/fastvep-consequence)
[INFO] [stdout] warning: unused variable: `in_intron`
[INFO] [stdout]    --> vendor/fastvep-consequence/src/predictor.rs:681:13
[INFO] [stdout]     |
[INFO] [stdout] 681 |         let in_intron = intron_info.is_some();
[INFO] [stdout]     |             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_in_intron`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `in_intron`
[INFO] [stdout]    --> vendor/fastvep-consequence/src/predictor.rs:681:13
[INFO] [stdout]     |
[INFO] [stdout] 681 |         let in_intron = intron_info.is_some();
[INFO] [stdout]     |             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_in_intron`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling idna_adapter v1.2.2
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling tower-http v0.6.11
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking arrow-buffer v58.3.0
[INFO] [stderr]    Compiling tokio-rustls v0.26.4
[INFO] [stderr]    Compiling hyper-rustls v0.27.9
[INFO] [stderr]    Compiling reqwest v0.12.28
[INFO] [stderr]     Checking arrow-data v58.3.0
[INFO] [stderr]     Checking arrow-array v58.3.0
[INFO] [stderr]    Compiling libduckdb-sys v1.10503.1
[INFO] [stderr]     Checking arrow-select v58.3.0
[INFO] [stderr]     Checking arrow-row v58.3.0
[INFO] [stderr]     Checking arrow-arith v58.3.0
[INFO] [stderr]     Checking arrow-ord v58.3.0
[INFO] [stderr]     Checking arrow-ipc v58.3.0
[INFO] [stderr]     Checking arrow-string v58.3.0
[INFO] [stderr]     Checking arrow-cast v58.3.0
[INFO] [stderr]     Checking parquet v58.3.0
[INFO] [stderr]     Checking arrow-json v58.3.0
[INFO] [stderr]     Checking arrow-csv v58.3.0
[INFO] [stderr]     Checking arrow v58.3.0
[INFO] [stderr]     Checking duckdb v1.10503.1
[INFO] [stderr]     Checking duckvep v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking duckvep-tools v0.3.0 (/opt/rustwide/workdir/tools)
[INFO] [stdout] warning: unused variable: `txst`
[INFO] [stdout]   --> examples/sweep_multi.rs:46:31
[INFO] [stdout]    |
[INFO] [stdout] 46 |     let (txc, txs, txe, _txx, txst, _txcs, _txce) = read_tx("/tmp/tx_iv.parquet");
[INFO] [stdout]    |                               ^^^^ help: if this is intentional, prefix it with an underscore: `_txst`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `UInt32Array`
[INFO] [stdout]   --> examples/codon_bench.rs:12:40
[INFO] [stdout]    |
[INFO] [stdout] 12 | use arrow::array::{Array, StringArray, UInt32Array};
[INFO] [stdout]    |                                        ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0583]: file not found for module `io`
[INFO] [stdout]  --> src/lib.rs:6:1
[INFO] [stdout]   |
[INFO] [stdout] 6 | mod io;
[INFO] [stdout]   | ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: to create the module `io`, create file "src/lib/io.rs" or "src/lib/io/mod.rs"
[INFO] [stdout]   = note: if there is a `mod io` elsewhere in the crate already, import it with `use crate::...` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0583]: file not found for module `vec_util`
[INFO] [stdout]  --> src/lib.rs:7:1
[INFO] [stdout]   |
[INFO] [stdout] 7 | mod vec_util;
[INFO] [stdout]   | ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: to create the module `vec_util`, create file "src/lib/vec_util.rs" or "src/lib/vec_util/mod.rs"
[INFO] [stdout]   = note: if there is a `mod vec_util` elsewhere in the crate already, import it with `use crate::...` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0583]: file not found for module `vep`
[INFO] [stdout]  --> src/lib.rs:8:1
[INFO] [stdout]   |
[INFO] [stdout] 8 | mod vep;
[INFO] [stdout]   | ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = help: to create the module `vep`, create file "src/lib/vep.rs" or "src/lib/vep/mod.rs"
[INFO] [stdout]   = note: if there is a `mod vep` elsewhere in the crate already, import it with `use crate::...` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `io` in the crate root
[INFO] [stdout]   --> src/lib.rs:13:12
[INFO] [stdout]    |
[INFO] [stdout] 13 | use crate::io::gff::ReadGffTranscripts;
[INFO] [stdout]    |            ^^ unresolved import
[INFO] [stdout]    |
[INFO] [stdout] help: a similar path exists
[INFO] [stdout]    |
[INFO] [stdout] 13 | use crate::core::io::gff::ReadGffTranscripts;
[INFO] [stdout]    |            ++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `io` in the crate root
[INFO] [stdout]   --> src/lib.rs:14:12
[INFO] [stdout]    |
[INFO] [stdout] 14 | use crate::io::vcf::{ReadVcf, VcfSamples};
[INFO] [stdout]    |            ^^ unresolved import
[INFO] [stdout]    |
[INFO] [stdout] help: a similar path exists
[INFO] [stdout]    |
[INFO] [stdout] 14 | use crate::core::io::vcf::{ReadVcf, VcfSamples};
[INFO] [stdout]    |            ++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `vep` in the crate root
[INFO] [stdout]   --> src/lib.rs:15:12
[INFO] [stdout]    |
[INFO] [stdout] 15 | use crate::vep::annotate::VepAnnotate;
[INFO] [stdout]    |            ^^^ could not find `vep` in the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `vep` in the crate root
[INFO] [stdout]   --> src/lib.rs:16:12
[INFO] [stdout]    |
[INFO] [stdout] 16 | use crate::vep::consequence::{
[INFO] [stdout]    |            ^^^ could not find `vep` in the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `vep` in the crate root
[INFO] [stdout]   --> src/lib.rs:19:12
[INFO] [stdout]    |
[INFO] [stdout] 19 | use crate::vep::normalize::NormalizeVariant;
[INFO] [stdout]    |            ^^^ could not find `vep` in the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `vep` in the crate root
[INFO] [stdout]   --> src/lib.rs:20:12
[INFO] [stdout]    |
[INFO] [stdout] 20 | use crate::vep::cdsseq::VepCdsSeq;
[INFO] [stdout]    |            ^^^ could not find `vep` in the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `vep` in the crate root
[INFO] [stdout]   --> src/lib.rs:21:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | use crate::vep::exons::VepExons;
[INFO] [stdout]    |            ^^^ could not find `vep` in the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `vep` in the crate root
[INFO] [stdout]   --> src/lib.rs:22:12
[INFO] [stdout]    |
[INFO] [stdout] 22 | use crate::vep::transcripts::VepTranscripts;
[INFO] [stdout]    |            ^^^ could not find `vep` in the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0433, E0583.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `duckvep` (example "duckvep") due to 11 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] warning: unused dependency `serde_json`
[INFO] [stderr]   --> vendor/fastvep-cache/Cargo.toml:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | serde_json = { workspace = true }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `serde_json`
[INFO] [stderr] warning: `fastvep-cache` (manifest) generated 1 warning
[INFO] [stderr] warning: unused dependency `log`
[INFO] [stderr]   --> vendor/fastvep-consequence/Cargo.toml:11:1
[INFO] [stderr]    |
[INFO] [stderr] 11 | log = { workspace = true }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `log`
[INFO] [stderr] warning: `fastvep-consequence` (manifest) generated 1 warning
[INFO] [stderr] warning: unused dependency `thiserror`
[INFO] [stderr]   --> vendor/fastvep-core/Cargo.toml:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | thiserror = { workspace = true }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `thiserror`
[INFO] [stderr] warning: `fastvep-core` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "inspect" "224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca", kill_on_drop: false }`
[INFO] [stdout] 224d828d2e0f85dfffe1d6d392b801df08d811231518a6cd8ba17adade2b21ca
