[INFO] cloning repository https://github.com/cademirch/clam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/cademirch/clam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcademirch%2Fclam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcademirch%2Fclam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] de62a3d9271c19285015a254b0d709bb7e7e4c9e [INFO] checking cademirch/clam against 0cefa27fe3deee26fc98ee44249406358d9f0d26 for pr-164789 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcademirch%2Fclam" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/cademirch/clam [INFO] finished tweaking git repo https://github.com/cademirch/clam [INFO] tweaked toml for git repo https://github.com/cademirch/clam written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/cademirch/clam on toolchain 0cefa27fe3deee26fc98ee44249406358d9f0d26 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0cefa27fe3deee26fc98ee44249406358d9f0d26" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/cademirch/clam already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0cefa27fe3deee26fc98ee44249406358d9f0d26" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: `package.homepage` is redundant with `package.repository` [INFO] [stderr] --> Cargo.toml:62:12 [INFO] [stderr] | [INFO] [stderr] 62 | homepage = "https://github.com/cademirch/clam" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 63 | name = "clam" [INFO] [stderr] 64 | repository = "https://github.com/cademirch/clam" [INFO] [stderr] | ----------------------------------- [INFO] [stderr] | [INFO] [stderr] = note: `cargo::redundant_homepage` is set to `warn` by default [INFO] [stderr] help: consider removing `package.homepage` [INFO] [stderr] warning: `clam` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/cademirch/d4-format.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded unsafe_cell_slice v0.2.2 [INFO] [stderr] Downloaded zarrs_storage v0.4.3 [INFO] [stderr] Downloaded zarrs_plugin v0.4.1 [INFO] [stderr] Downloaded page_size v0.6.0 [INFO] [stderr] Downloaded zarrs_codec v0.2.1 [INFO] [stderr] Downloaded zarrs_chunk_key_encoding v0.2.0 [INFO] [stderr] Downloaded rayon_iter_concurrent_limit v0.2.0 [INFO] [stderr] Downloaded cc v1.1.31 [INFO] [stderr] Downloaded num v0.4.3 [INFO] [stderr] Downloaded bytemuck_derive v1.10.2 [INFO] [stderr] Downloaded rawpointer v0.2.1 [INFO] [stderr] Downloaded link-cplusplus v1.0.12 [INFO] [stderr] Downloaded crc32c v0.6.8 [INFO] [stderr] Downloaded errno v0.3.9 [INFO] [stderr] Downloaded fastrand v2.1.1 [INFO] [stderr] Downloaded normalize-line-endings v0.3.0 [INFO] [stderr] Downloaded float-cmp v0.9.0 [INFO] [stderr] Downloaded env_filter v0.1.2 [INFO] [stderr] Downloaded zarrs_metadata_ext v0.4.2 [INFO] [stderr] Downloaded num-rational v0.4.2 [INFO] [stderr] Downloaded zarrs_data_type v0.9.0 [INFO] [stderr] Downloaded zarrs_metadata v0.7.4 [INFO] [stderr] Downloaded monostate v1.0.2 [INFO] [stderr] Downloaded monostate-impl v1.0.2 [INFO] [stderr] Downloaded zarrs_chunk_grid v0.5.1 [INFO] [stderr] Downloaded tagptr v0.2.0 [INFO] [stderr] Downloaded relative-path v1.9.3 [INFO] [stderr] Downloaded predicates-core v1.0.8 [INFO] [stderr] Downloaded unicode-ident v1.0.13 [INFO] [stderr] Downloaded auto_impl v1.3.0 [INFO] [stderr] Downloaded num-complex v0.4.6 [INFO] [stderr] Downloaded zarrs_filesystem v0.3.9 [INFO] [stderr] Downloaded quick_cache v0.6.18 [INFO] [stderr] Downloaded snap v1.1.1 [INFO] [stderr] Downloaded predicates v3.1.2 [INFO] [stderr] Downloaded anstyle v1.0.9 [INFO] [stderr] Downloaded noodles-core v0.16.0 [INFO] [stderr] Downloaded env_logger v0.11.5 [INFO] [stderr] Downloaded anstream v0.6.17 [INFO] [stderr] Downloaded colorchoice v1.0.3 [INFO] [stderr] Downloaded anstyle-query v1.1.2 [INFO] [stderr] Downloaded csv-core v0.1.11 [INFO] [stderr] Downloaded proc-macro2 v1.0.89 [INFO] [stderr] Downloaded bytemuck v1.24.0 [INFO] [stderr] Downloaded portable-atomic-util v0.2.4 [INFO] [stderr] Downloaded semver v1.0.24 [INFO] [stderr] Downloaded twox-hash v2.1.2 [INFO] [stderr] Downloaded tempfile v3.13.0 [INFO] [stderr] Downloaded termtree v0.4.1 [INFO] [stderr] Downloaded doc-comment v0.3.3 [INFO] [stderr] Downloaded bytes v1.8.0 [INFO] [stderr] Downloaded matrixmultiply v0.3.10 [INFO] [stderr] Downloaded blusc v0.0.6 [INFO] [stderr] Downloaded lz4_flex v0.12.1 [INFO] [stderr] Downloaded rust-lapper v1.2.0 [INFO] [stderr] Downloaded rstest v0.23.0 [INFO] [stderr] Downloaded rstest_macros v0.23.0 [INFO] [stderr] Downloaded difflib v0.4.0 [INFO] [stderr] Downloaded noodles v0.89.0 [INFO] [stderr] Downloaded lexical-write-integer v1.0.2 [INFO] [stderr] Downloaded number_prefix v0.4.0 [INFO] [stderr] Downloaded is_terminal_polyfill v1.70.1 [INFO] [stderr] Downloaded anstyle-wincon v3.0.6 [INFO] [stderr] Downloaded anstyle-parse v0.2.6 [INFO] [stderr] Downloaded memmap v0.7.0 [INFO] [stderr] Downloaded rustc-demangle v0.1.24 [INFO] [stderr] Downloaded wait-timeout v0.2.0 [INFO] [stderr] Downloaded derive_more v2.0.1 [INFO] [stderr] Downloaded derive_more-impl v2.0.1 [INFO] [stderr] Downloaded indexmap v2.6.0 [INFO] [stderr] Downloaded flate2 v1.1.2 [INFO] [stderr] Downloaded async-lock v3.4.1 [INFO] [stderr] Downloaded futures-timer v3.0.3 [INFO] [stderr] Downloaded noodles-csi v0.43.0 [INFO] [stderr] Downloaded noodles-bgzf v0.35.0 [INFO] [stderr] Downloaded lexical-parse-integer v1.0.2 [INFO] [stderr] Downloaded indicatif v0.17.9 [INFO] [stderr] Downloaded encode_unicode v0.3.6 [INFO] [stderr] Downloaded humantime v2.1.0 [INFO] [stderr] Downloaded owo-colors v4.2.2 [INFO] [stderr] Downloaded blosc-src v0.3.6 [INFO] [stderr] Downloaded snappy_src v0.2.5+snappy.1.2.2 [INFO] [stderr] Downloaded lexical-core v1.0.2 [INFO] [stderr] Downloaded console v0.15.8 [INFO] [stderr] Downloaded indenter v0.3.4 [INFO] [stderr] Downloaded clap v4.5.20 [INFO] [stderr] Downloaded clap_derive v4.5.18 [INFO] [stderr] Downloaded clap_lex v0.7.2 [INFO] [stderr] Downloaded serde_json v1.0.132 [INFO] [stderr] Downloaded hashbrown v0.15.0 [INFO] [stderr] Downloaded lexical-util v1.0.3 [INFO] [stderr] Downloaded lexical-write-float v1.0.2 [INFO] [stderr] Downloaded eyre v0.6.12 [INFO] [stderr] Downloaded portable-atomic v1.9.0 [INFO] [stderr] Downloaded winnow v0.6.21 [INFO] [stderr] Downloaded addr2line v0.24.2 [INFO] [stderr] Downloaded camino v1.1.9 [INFO] [stderr] Downloaded clap_builder v4.5.20 [INFO] [stderr] Downloaded syn v2.0.87 [INFO] [stderr] Downloaded ndarray v0.17.2 [INFO] [stderr] Downloaded moka v0.12.11 [INFO] [stderr] Downloaded lexical-parse-float v1.0.2 [INFO] [stderr] Downloaded assert_cmd v2.0.16 [INFO] [stderr] Downloaded zarrs v0.23.9 [INFO] [stderr] Downloaded backtrace v0.3.74 [INFO] [stderr] Downloaded rustix v0.38.38 [INFO] [stderr] Downloaded bstr v1.10.0 [INFO] [stderr] Downloaded predicates-tree v1.0.11 [INFO] [stderr] Downloaded lz4-sys v1.11.1+lz4-1.10.0 [INFO] [stderr] Downloaded gimli v0.31.1 [INFO] [stderr] Downloaded positioned-io v0.3.5 [INFO] [stderr] Downloaded object v0.36.5 [INFO] [stderr] Downloaded libc v0.2.161 [INFO] [stderr] Downloaded libz-sys v1.1.23 [INFO] [stderr] Downloaded csv v1.3.0 [INFO] [stderr] Downloaded color-eyre v0.6.5 [INFO] [stderr] Downloaded noodles-tabix v0.49.0 [INFO] [stderr] Downloaded noodles-bed v0.20.0 [INFO] [stderr] Downloaded noodles-vcf v0.72.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c0af3998e971868164375a7dfb646c9933ddd1a3bdb00fa2041266763dc1eeab" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4 [INFO] running `Command { std: "docker" "start" "2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4" "/opt/rustwide/cargo-home/bin/cargo" "+0cefa27fe3deee26fc98ee44249406358d9f0d26" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4" "/opt/rustwide/cargo-home/bin/cargo" "+0cefa27fe3deee26fc98ee44249406358d9f0d26" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] warning: `package.homepage` is redundant with `package.repository` [INFO] [stderr] --> Cargo.toml:62:12 [INFO] [stderr] | [INFO] [stderr] 62 | homepage = "https://github.com/cademirch/clam" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 63 | name = "clam" [INFO] [stderr] 64 | repository = "https://github.com/cademirch/clam" [INFO] [stderr] | ----------------------------------- [INFO] [stderr] | [INFO] [stderr] = note: `cargo::redundant_homepage` is set to `warn` by default [INFO] [stderr] help: consider removing `package.homepage` [INFO] [stderr] warning: `clam` (manifest) generated 1 warning [INFO] [stderr] Compiling libc v0.2.161 [INFO] [stderr] Compiling proc-macro2 v1.0.89 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Checking regex-syntax v0.8.5 [INFO] [stderr] Checking equivalent v1.0.1 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Checking hashbrown v0.15.0 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Compiling unicode-xid v0.2.6 [INFO] [stderr] Checking ryu v1.0.18 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling semver v1.0.24 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Compiling serde_json v1.0.132 [INFO] [stderr] Checking adler2 v2.0.0 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Checking bytes v1.8.0 [INFO] [stderr] Checking pin-project-lite v0.2.15 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling slab v0.4.9 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking flate2 v1.1.2 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Checking lexical-util v1.0.3 [INFO] [stderr] Compiling syn v2.0.87 [INFO] [stderr] Checking indexmap v2.6.0 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking futures-core v0.3.31 [INFO] [stderr] Checking futures-sink v0.3.31 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Checking futures-channel v0.3.31 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking pin-utils v0.1.0 [INFO] [stderr] Checking futures-task v0.3.31 [INFO] [stderr] Checking futures-io v0.3.31 [INFO] [stderr] Compiling cc v1.1.31 [INFO] [stderr] Checking anstyle v1.0.9 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Checking inventory v0.3.21 [INFO] [stderr] Compiling portable-atomic v1.9.0 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Compiling parking_lot_core v0.9.12 [INFO] [stderr] Checking unsafe_cell_slice v0.2.2 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Checking noodles-bgzf v0.35.0 [INFO] [stderr] Checking concurrent-queue v2.5.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking parking v2.2.1 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking lexical-write-integer v1.0.2 [INFO] [stderr] Checking lexical-parse-integer v1.0.2 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking tinyvec_macros v0.1.1 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Checking log v0.4.28 [INFO] [stderr] Checking anstream v0.6.17 [INFO] [stderr] Checking tinyvec v1.11.0 [INFO] [stderr] Checking lock_api v0.4.14 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking lexical-write-float v1.0.2 [INFO] [stderr] Checking lexical-parse-float v1.0.2 [INFO] [stderr] Checking event-listener v5.4.1 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Compiling crc32c v0.6.8 [INFO] [stderr] Compiling moka v0.12.11 [INFO] [stderr] Compiling rustix v0.38.38 [INFO] [stderr] Checking gimli v0.31.1 [INFO] [stderr] Checking regex-automata v0.4.14 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling eyre v0.6.12 [INFO] [stderr] Checking allocator-api2 v0.2.21 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking once_cell v1.20.2 [INFO] [stderr] Checking foldhash v0.2.0 [INFO] [stderr] Compiling owo-colors v4.2.2 [INFO] [stderr] Checking lexical-core v1.0.2 [INFO] [stderr] Checking walkdir v2.5.0 [INFO] [stderr] Checking uuid v1.11.0 [INFO] [stderr] Checking parking_lot v0.12.5 [INFO] [stderr] Checking event-listener-strategy v0.5.4 [INFO] [stderr] Checking positioned-io v0.3.5 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking page_size v0.6.0 [INFO] [stderr] Checking object v0.36.5 [INFO] [stderr] Checking unicode-width v0.1.14 [INFO] [stderr] Checking clap_lex v0.7.2 [INFO] [stderr] Checking hashbrown v0.16.0 [INFO] [stderr] Checking rustc-demangle v0.1.24 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Compiling toml_datetime v0.6.8 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling link-cplusplus v1.0.12 [INFO] [stderr] Compiling lz4-sys v1.11.1+lz4-1.10.0 [INFO] [stderr] Compiling libz-sys v1.1.23 [INFO] [stderr] Compiling snappy_src v0.2.5+snappy.1.2.2 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling blosc-src v0.3.6 [INFO] [stderr] Checking indenter v0.3.4 [INFO] [stderr] Checking pathdiff v0.2.3 [INFO] [stderr] Checking tagptr v0.2.0 [INFO] [stderr] Compiling winnow v0.6.21 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Compiling zarrs v0.23.9 [INFO] [stderr] Compiling camino v1.1.9 [INFO] [stderr] Checking bitflags v2.6.0 [INFO] [stderr] Checking lru v0.16.2 [INFO] [stderr] Checking clap_builder v4.5.20 [INFO] [stderr] Checking console v0.15.8 [INFO] [stderr] Checking rayon_iter_concurrent_limit v0.2.0 [INFO] [stderr] Checking d4-framefile v0.3.6 (https://github.com/cademirch/d4-format.git#5e6c2e76) [INFO] [stderr] Checking async-lock v3.4.1 [INFO] [stderr] Checking addr2line v0.24.2 [INFO] [stderr] Compiling rstest_macros v0.23.0 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking thread_local v1.1.9 [INFO] [stderr] Checking humantime v2.1.0 [INFO] [stderr] Checking base64 v0.22.1 [INFO] [stderr] Checking predicates-core v1.0.8 [INFO] [stderr] Checking unicode-width v0.2.0 [INFO] [stderr] Checking fastrand v2.1.1 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking indicatif v0.17.9 [INFO] [stderr] Checking regex v1.12.3 [INFO] [stderr] Checking bstr v1.10.0 [INFO] [stderr] Checking float-cmp v0.9.0 [INFO] [stderr] Checking rust-lapper v1.2.0 [INFO] [stderr] Compiling assert_cmd v2.0.16 [INFO] [stderr] Checking noodles-core v0.16.0 [INFO] [stderr] Checking env_filter v0.1.2 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Checking env_logger v0.11.5 [INFO] [stderr] Checking normalize-line-endings v0.3.0 [INFO] [stderr] Compiling relative-path v1.9.3 [INFO] [stderr] Checking difflib v0.4.0 [INFO] [stderr] Checking noodles-csi v0.43.0 [INFO] [stderr] Checking noodles-bed v0.20.0 [INFO] [stderr] Checking termtree v0.4.1 [INFO] [stderr] Checking wait-timeout v0.2.0 [INFO] [stderr] Checking predicates v3.1.2 [INFO] [stderr] Checking futures-timer v3.0.3 [INFO] [stderr] Checking predicates-tree v1.0.11 [INFO] [stderr] Checking tempfile v3.13.0 [INFO] [stderr] Checking noodles-tabix v0.49.0 [INFO] [stderr] Checking noodles-vcf v0.72.0 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling bytemuck_derive v1.10.2 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling derive_more-impl v2.0.1 [INFO] [stderr] Compiling zerocopy-derive v0.8.27 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Compiling monostate-impl v1.0.2 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Compiling auto_impl v1.3.0 [INFO] [stderr] Checking num v0.4.3 [INFO] [stderr] Checking monostate v1.0.2 [INFO] [stderr] Compiling async-trait v0.1.89 [INFO] [stderr] Compiling serde_repr v0.1.20 [INFO] [stderr] Checking backtrace v0.3.74 [INFO] [stderr] Checking ndarray v0.17.2 [INFO] [stderr] Compiling toml_edit v0.22.22 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Checking futures-util v0.3.31 [INFO] [stderr] Checking color-eyre v0.6.5 [INFO] [stderr] Checking noodles v0.89.0 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking derive_more v2.0.1 [INFO] [stderr] Checking zarrs_storage v0.4.3 [INFO] [stderr] Checking clap v4.5.20 [INFO] [stderr] Checking zarrs_filesystem v0.3.9 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking half v2.7.1 [INFO] [stderr] Compiling proc-macro-crate v3.2.0 [INFO] [stderr] Checking zarrs_metadata v0.7.4 [INFO] [stderr] Checking zarrs_plugin v0.4.1 [INFO] [stderr] Checking d4 v0.3.11 (https://github.com/cademirch/d4-format.git#5e6c2e76) [INFO] [stderr] Checking futures-executor v0.3.31 [INFO] [stderr] Checking futures v0.3.31 [INFO] [stderr] Checking zarrs_chunk_grid v0.5.1 [INFO] [stderr] Checking zarrs_data_type v0.9.0 [INFO] [stderr] Checking zarrs_metadata_ext v0.4.2 [INFO] [stderr] Checking zarrs_chunk_key_encoding v0.2.0 [INFO] [stderr] Checking zarrs_codec v0.2.1 [INFO] [stderr] Checking rstest v0.23.0 [INFO] [stderr] Checking clam v1.1.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/core/contig.rs:85:25 [INFO] [stdout] | [INFO] [stdout] 85 | None => bail!("Contig '{}' not found in comparison set", name), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: `#[warn(semicolon_in_expressions_from_non_local_macros)]` (part of `#[warn(future_incompatible)]`) on by default [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/utils.rs:70:29 [INFO] [stdout] | [INFO] [stdout] 70 | Some(Err(e)) => bail!("Bad bed record end: {:?}. Error: {:?}", record, e), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/utils.rs:71:21 [INFO] [stdout] | [INFO] [stdout] 71 | None => bail!("Bed record missing end: {:?}", record), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/query.rs:31:32 [INFO] [stdout] | [INFO] [stdout] 31 | Some(Err(_)) | None => bail!( [INFO] [stdout] | ________________________________^ [INFO] [stdout] 32 | | "Variant record: {:?} does not have a valid position", [INFO] [stdout] 33 | | record [INFO] [stdout] 34 | | ), [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/query.rs:39:19 [INFO] [stdout] | [INFO] [stdout] 39 | Err(_) => bail!( [INFO] [stdout] | ___________________^ [INFO] [stdout] 40 | | "Variant record: {:?} does not have a valid position", [INFO] [stdout] 41 | | record [INFO] [stdout] 42 | | ), [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/variants.rs:51:26 [INFO] [stdout] | [INFO] [stdout] 51 | _ => bail!("Unsupported ploidy: {}", ploidy), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/variants.rs:58:18 [INFO] [stdout] | [INFO] [stdout] 58 | _ => bail!("Invalid GT value type"), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/variants.rs:101:14 [INFO] [stdout] | [INFO] [stdout] 101 | _ => bail!("Invalid GT value type"), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/core/contig.rs:85:25 [INFO] [stdout] | [INFO] [stdout] 85 | None => bail!("Contig '{}' not found in comparison set", name), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: `#[warn(semicolon_in_expressions_from_non_local_macros)]` (part of `#[warn(future_incompatible)]`) on by default [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/utils.rs:70:29 [INFO] [stdout] | [INFO] [stdout] 70 | Some(Err(e)) => bail!("Bad bed record end: {:?}. Error: {:?}", record, e), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/utils.rs:71:21 [INFO] [stdout] | [INFO] [stdout] 71 | None => bail!("Bed record missing end: {:?}", record), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/query.rs:31:32 [INFO] [stdout] | [INFO] [stdout] 31 | Some(Err(_)) | None => bail!( [INFO] [stdout] | ________________________________^ [INFO] [stdout] 32 | | "Variant record: {:?} does not have a valid position", [INFO] [stdout] 33 | | record [INFO] [stdout] 34 | | ), [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/query.rs:39:19 [INFO] [stdout] | [INFO] [stdout] 39 | Err(_) => bail!( [INFO] [stdout] | ___________________^ [INFO] [stdout] 40 | | "Variant record: {:?} does not have a valid position", [INFO] [stdout] 41 | | record [INFO] [stdout] 42 | | ), [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/variants.rs:51:26 [INFO] [stdout] | [INFO] [stdout] 51 | _ => bail!("Unsupported ploidy: {}", ploidy), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/variants.rs:58:18 [INFO] [stdout] | [INFO] [stdout] 58 | _ => bail!("Invalid GT value type"), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trailing semicolon in macro used in expression position [INFO] [stdout] --> src/stat/vcf/variants.rs:101:14 [INFO] [stdout] | [INFO] [stdout] 101 | _ => bail!("Invalid GT value type"), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79813 [INFO] [stdout] = note: this warning originates in the macro `bail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `paths` [INFO] [stdout] --> src/core/depth.rs:234:44 [INFO] [stdout] | [INFO] [stdout] 234 | DepthSources::IndividualFiles{ paths, readers } => readers [INFO] [stdout] | ^^^^^ help: try ignoring the field: `paths: _` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `min_gq` is never read [INFO] [stdout] --> src/core/depth.rs:142:5 [INFO] [stdout] | [INFO] [stdout] 138 | pub struct DepthProcessor { [INFO] [stdout] | -------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 142 | min_gq: Option [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `paths` [INFO] [stdout] --> src/core/depth.rs:234:44 [INFO] [stdout] | [INFO] [stdout] 234 | DepthSources::IndividualFiles{ paths, readers } => readers [INFO] [stdout] | ^^^^^ help: try ignoring the field: `paths: _` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `min_gq` is never read [INFO] [stdout] --> src/core/depth.rs:142:5 [INFO] [stdout] | [INFO] [stdout] 138 | pub struct DepthProcessor { [INFO] [stdout] | -------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 142 | min_gq: Option [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 28s [INFO] running `Command { std: "docker" "inspect" "2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4", kill_on_drop: false }` [INFO] [stdout] 2f69b2b8ca41d599348fd2a9fc1dea710c13cba24b7abc46f0c0383707ef2df4