[INFO] cloning repository https://github.com/IMTMarburg/mbf_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/IMTMarburg/mbf_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 906a4ccff4ac21ca2ed097e42c89b1df983bae0e
[INFO] checking IMTMarburg/mbf_bam against 5f93549e108157f071a34f220b74b25690496aa1 for pr-162986
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/IMTMarburg/mbf_bam
[INFO] finished tweaking git repo https://github.com/IMTMarburg/mbf_bam
[INFO] tweaked toml for git repo https://github.com/IMTMarburg/mbf_bam written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/IMTMarburg/mbf_bam on toolchain 5f93549e108157f071a34f220b74b25690496aa1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5f93549e108157f071a34f220b74b25690496aa1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/IMTMarburg/mbf_bam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5f93549e108157f071a34f220b74b25690496aa1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "496ab9d5754c3e4992c3e631e4a9124390e617960cc6d5e690be79e7369a441f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "496ab9d5754c3e4992c3e631e4a9124390e617960cc6d5e690be79e7369a441f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "496ab9d5754c3e4992c3e631e4a9124390e617960cc6d5e690be79e7369a441f" "/opt/rustwide/cargo-home/bin/cargo" "+5f93549e108157f071a34f220b74b25690496aa1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "496ab9d5754c3e4992c3e631e4a9124390e617960cc6d5e690be79e7369a441f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "496ab9d5754c3e4992c3e631e4a9124390e617960cc6d5e690be79e7369a441f" "/opt/rustwide/cargo-home/bin/cargo" "+5f93549e108157f071a34f220b74b25690496aa1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/count_reads/by_barcode.rs:95:25
[INFO] [stdout]    |
[INFO] [stdout] 95 |     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stdout]    |                         ^             ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 95 -     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stdout] 95 +     flat.sort_by(|a, b| a.1.cmp(&b.1));
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/count_reads/by_barcode.rs:95:25
[INFO] [stdout]    |
[INFO] [stdout] 95 |     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stdout]    |                         ^             ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 95 -     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stdout] 95 +     flat.sort_by(|a, b| a.1.cmp(&b.1));
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::u32::MAX`: replaced by the `MAX` associated constant on this type
[INFO] [stdout]   --> src/count_reads/introns.rs:48:31
[INFO] [stdout]    |
[INFO] [stdout] 48 |             .entry((std::u32::MAX, std::u32::MAX - intron_count))
[INFO] [stdout]    |                               ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::u32::MAX`: replaced by the `MAX` associated constant on this type
[INFO] [stdout]   --> src/count_reads/introns.rs:48:46
[INFO] [stdout]    |
[INFO] [stdout] 48 |             .entry((std::u32::MAX, std::u32::MAX - intron_count))
[INFO] [stdout]    |                                              ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::u32::MAX`: replaced by the `MAX` associated constant on this type
[INFO] [stdout]   --> src/count_reads/introns.rs:48:31
[INFO] [stdout]    |
[INFO] [stdout] 48 |             .entry((std::u32::MAX, std::u32::MAX - intron_count))
[INFO] [stdout]    |                               ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::u32::MAX`: replaced by the `MAX` associated constant on this type
[INFO] [stdout]   --> src/count_reads/introns.rs:48:46
[INFO] [stdout]    |
[INFO] [stdout] 48 |             .entry((std::u32::MAX, std::u32::MAX - intron_count))
[INFO] [stdout]    |                                              ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/lib.rs:20:17
[INFO] [stdout]    |
[INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stdout]    |                 ^---
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Fail` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_DERIVE_failure_Fail_FOR_BamError`
[INFO] [stdout] 21 | pub enum BamError {
[INFO] [stdout]    |          -------- `BamError` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/lib.rs:20:17
[INFO] [stdout]    |
[INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stdout]    |                 ^---
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Display` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_DERIVE_failure_core_fmt_Display_FOR_BamError`
[INFO] [stdout] 21 | pub enum BamError {
[INFO] [stdout]    |          -------- `BamError` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/count_reads/chunked_genome.rs:45:17
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator {
[INFO] [stdout]    |                 ^^^^^     ^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator<'_> {
[INFO] [stdout]    |                                                ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/lib.rs:20:17
[INFO] [stdout]    |
[INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stdout]    |                 ^---
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Fail` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_DERIVE_failure_Fail_FOR_BamError`
[INFO] [stdout] 21 | pub enum BamError {
[INFO] [stdout]    |          -------- `BamError` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/lib.rs:20:17
[INFO] [stdout]    |
[INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stdout]    |                 ^---
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Display` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_DERIVE_failure_core_fmt_Display_FOR_BamError`
[INFO] [stdout] 21 | pub enum BamError {
[INFO] [stdout]    |          -------- `BamError` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/count_reads/chunked_genome.rs:45:17
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator {
[INFO] [stdout]    |                 ^^^^^     ^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator<'_> {
[INFO] [stdout]    |                                                ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6m 54s
[INFO] running `Command { std: "docker" "inspect" "496ab9d5754c3e4992c3e631e4a9124390e617960cc6d5e690be79e7369a441f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "496ab9d5754c3e4992c3e631e4a9124390e617960cc6d5e690be79e7369a441f", kill_on_drop: false }`
[INFO] [stdout] 496ab9d5754c3e4992c3e631e4a9124390e617960cc6d5e690be79e7369a441f
