[INFO] fetching crate deepbiop-cli 0.1.17...
[INFO] checking deepbiop-cli-0.1.17 against 28b6e691688c15cef4c60d9044274e7b84397870 for pr-162986
[INFO] extracting crate deepbiop-cli 0.1.17 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.17
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.17
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.17 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.17 on toolchain 28b6e691688c15cef4c60d9044274e7b84397870
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+28b6e691688c15cef4c60d9044274e7b84397870" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.17 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+28b6e691688c15cef4c60d9044274e7b84397870" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:95:12
[INFO] [stderr]     |
[INFO] [stderr]  95 | homepage = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 100 | repository = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `deepbiop-cli` (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-tabix v0.67.0
[INFO] [stderr]   Downloaded noodles v0.116.0
[INFO] [stderr]   Downloaded noodles-fastq v0.23.0
[INFO] [stderr]   Downloaded noodles-fasta v0.66.0
[INFO] [stderr]   Downloaded noodles-vcf v0.93.0
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded noodles-csi v0.61.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.51.0
[INFO] [stderr]   Downloaded bit-vec v0.10.1
[INFO] [stderr]   Downloaded noodles-gff v0.62.0
[INFO] [stderr]   Downloaded noodles-bam v0.95.0
[INFO] [stderr]   Downloaded ndarray-npy v0.10.0
[INFO] [stderr]   Downloaded human-panic v2.0.8
[INFO] [stderr]   Downloaded noodles-sam v0.90.0
[INFO] [stderr]   Downloaded needletail v0.7.3
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.17
[INFO] [stderr]   Downloaded py_literal v0.4.0
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] [stderr]   Downloaded noodles-core v0.20.0
[INFO] [stderr]   Downloaded lexical v7.0.5
[INFO] [stderr]   Downloaded macro_rules_attribute-proc_macro v0.2.3
[INFO] [stderr]   Downloaded dary_heap v0.3.9
[INFO] [stderr]   Downloaded gemm-common v0.19.0
[INFO] [stderr]   Downloaded macro_rules_attribute v0.2.3
[INFO] [stderr]   Downloaded deepbiop-core v0.1.17
[INFO] [stderr]   Downloaded dyn-stack-macros v0.1.3
[INFO] [stderr]   Downloaded gemm v0.19.0
[INFO] [stderr]   Downloaded gemm-f32 v0.19.0
[INFO] [stderr]   Downloaded gemm-f16 v0.19.0
[INFO] [stderr]   Downloaded gemm-c32 v0.19.0
[INFO] [stderr]   Downloaded brotli-decompressor v6.0.0
[INFO] [stderr]   Downloaded sysctl v0.6.0
[INFO] [stderr]   Downloaded gemm-c64 v0.19.0
[INFO] [stderr]   Downloaded candle-core v0.11.0
[INFO] [stderr]   Downloaded tokenizers v0.22.2
[INFO] [stderr]   Downloaded gemm-f64 v0.19.0
[INFO] [stderr]   Downloaded deepbiop-bam v0.1.17
[INFO] [stderr]   Downloaded deepbiop-fq v0.1.17
[INFO] [stderr]   Downloaded float8 v0.7.0
[INFO] [stderr]   Downloaded clap-markdown v0.1.5
[INFO] [stderr]   Downloaded deepbiop-fa v0.1.17
[INFO] [stderr]   Downloaded dyn-stack v0.13.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108
[INFO] running `Command { std: "docker" "start" "b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108" "/opt/rustwide/cargo-home/bin/cargo" "+28b6e691688c15cef4c60d9044274e7b84397870" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108" "/opt/rustwide/cargo-home/bin/cargo" "+28b6e691688c15cef4c60d9044274e7b84397870" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:95:12
[INFO] [stderr]     |
[INFO] [stderr]  95 | homepage = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 100 | repository = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `deepbiop-cli` (manifest) generated 1 warning
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]    Compiling zerocopy v0.8.57
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking aho-corasick v1.1.5
[INFO] [stderr]    Compiling syn v3.0.6
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking arrow-schema v60.0.0
[INFO] [stderr]     Checking zlib-rs v0.6.8
[INFO] [stderr]     Checking crossbeam-deque v0.8.8
[INFO] [stderr]    Compiling cc v1.4.7
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling pulp v0.22.3
[INFO] [stderr]    Compiling crc32fast v1.5.2
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking rayon-core v1.13.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.17
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]     Checking reborrow v0.5.5
[INFO] [stderr]     Checking pulp-wasm-simd-flag v0.1.1
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]     Checking getrandom v0.4.3
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking simd-adler32 v0.3.10
[INFO] [stderr]     Checking bit-vec v0.10.1
[INFO] [stderr]    Compiling serde_json v1.0.151
[INFO] [stderr]     Checking writeable v0.6.4
[INFO] [stderr]     Checking miniz_oxide v0.9.1
[INFO] [stderr]    Compiling flatbuffers v25.12.19
[INFO] [stderr]     Checking smallvec v1.16.1
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]    Compiling esaxx-rs v0.1.10
[INFO] [stderr]     Checking alloc-no-stdlib v3.0.0
[INFO] [stderr]    Compiling icu_locale_fallback_data v2.3.0
[INFO] [stderr]    Compiling zstd-safe v8.0.0
[INFO] [stderr]     Checking litemap v0.8.3
[INFO] [stderr]    Compiling zstd-safe v7.3.0
[INFO] [stderr]     Checking nom v7.1.3
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking alloc-stdlib v0.3.0
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking castaway v0.2.4
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking num-integer v0.1.47
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking atoi v3.1.0
[INFO] [stderr]    Compiling snap v1.1.2
[INFO] [stderr]    Compiling macro_rules_attribute-proc_macro v0.2.3
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]     Checking base64 v0.13.1
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking num-bigint v0.5.1
[INFO] [stderr]    Compiling icu_segmenter_data v2.3.0
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking flate2 v1.1.10
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking macro_rules_attribute v0.2.3
[INFO] [stderr]     Checking brotli-decompressor v6.0.0
[INFO] [stderr]     Checking unicode-normalization-alignments v0.1.12
[INFO] [stderr]     Checking typed-path v0.12.3
[INFO] [stderr]     Checking twox-hash v2.1.4
[INFO] [stderr]     Checking bumpalo v3.20.3
[INFO] [stderr]     Checking libbz2-rs-sys v0.2.5
[INFO] [stderr]     Checking lz4_flex v0.14.0
[INFO] [stderr]     Checking zopfli v0.8.3
[INFO] [stderr]     Checking chacha20 v0.10.2
[INFO] [stderr]     Checking bzip2 v0.6.1
[INFO] [stderr]     Checking num-bigint v0.4.8
[INFO] [stderr]     Checking memmap2 v0.9.11
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking buffer-redux v1.1.0
[INFO] [stderr]    Compiling zstd-sys v2.1.0+zstd.1.5.7
[INFO] [stderr]    Compiling onig_sys v69.9.3
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]     Checking brotli v9.0.0
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking zip v6.0.0
[INFO] [stderr]     Checking rand v0.10.2
[INFO] [stderr]     Checking lexical v7.0.5
[INFO] [stderr]     Checking itertools v0.15.0
[INFO] [stderr]     Checking clap_lex v1.1.1
[INFO] [stderr]     Checking noodles-bgzf v0.51.0
[INFO] [stderr]     Checking rayon-cond v0.4.0
[INFO] [stderr]     Checking liblzma v0.3.6
[INFO] [stderr]     Checking smawk v0.3.3
[INFO] [stderr]     Checking zip v8.6.0
[INFO] [stderr]     Checking unicode-width v0.2.2
[INFO] [stderr]     Checking clap_builder v4.6.7
[INFO] [stderr]     Checking colored v3.1.1
[INFO] [stderr]    Compiling prettyplease v0.3.0
[INFO] [stderr]    Compiling object v0.37.3
[INFO] [stderr]     Checking gimli v0.32.3
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking rand_distr v0.6.0
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking bstr v1.13.1
[INFO] [stderr]     Checking regex v1.13.1
[INFO] [stderr]     Checking toml_datetime v1.1.1+spec-1.1.0
[INFO] [stderr]     Checking serde_spanned v1.1.1
[INFO] [stderr]     Checking noodles-core v0.20.0
[INFO] [stderr]     Checking noodles-fastq v0.23.0
[INFO] [stderr]     Checking rustc-demangle v0.1.28
[INFO] [stderr]     Checking toml_writer v1.1.2+spec-1.1.0
[INFO] [stderr]     Checking noodles-csi v0.61.0
[INFO] [stderr]     Checking noodles-fasta v0.66.0
[INFO] [stderr]     Checking jiff-core v0.1.1
[INFO] [stderr]     Checking toml v1.1.6+spec-1.1.0
[INFO] [stderr]     Checking env_filter v2.0.0
[INFO] [stderr]     Checking nix v0.31.3
[INFO] [stderr]     Checking uuid v1.26.1
[INFO] [stderr]     Checking sysinfo v0.38.4
[INFO] [stderr]     Checking noodles-tabix v0.67.0
[INFO] [stderr]     Checking noodles-sam v0.90.0
[INFO] [stderr]     Checking noodles-gff v0.62.0
[INFO] [stderr]     Checking noodles-vcf v0.93.0
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling pest_generator v2.9.1
[INFO] [stderr]     Checking jiff v0.2.37
[INFO] [stderr]     Checking ctrlc v3.5.2
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/28b6e691688c15cef4c60d9044274e7b84397870/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-3.0.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat,unused-externs-silent --crate-type lib --emit=dep-info,metadata,link -Z embed-metadata=no -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=eff99ad0be4df4cf -C extra-filename=-261ec912ddb1ff4b --out-dir /opt/rustwide/target/debug/build/syn/261ec912ddb1ff4b/out -L dependency=/opt/rustwide/target/debug/build/proc-macro2/c062a139c850ccf4/out -L dependency=/opt/rustwide/target/debug/build/unicode-ident/06275983cc9514f8/out --extern proc_macro2=/opt/rustwide/target/debug/build/proc-macro2/c062a139c850ccf4/out/libproc_macro2-c062a139c850ccf4.rmeta --extern quote=/opt/rustwide/target/debug/build/quote/63a63655125647b2/out/libquote-63a63655125647b2.rmeta --extern unicode_ident=/opt/rustwide/target/debug/build/unicode-ident/06275983cc9514f8/out/libunicode_ident-06275983cc9514f8.rmeta --cap-lints allow --cap-lints=forbid --force-warn=unused_crate_dependencies` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/28b6e691688c15cef4c60d9044274e7b84397870/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-9.0.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat,unused-externs-silent --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "billing", "default", "disable-timer", "disallow_large_window_size", "external-literal-probability", "ffi-api", "float64", "floating_point_context_mixing", "no-stdlib-ffi-binding", "pass-through-ffi-panics", "portable-float", "safe", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=e404b559a4446586 -C extra-filename=-13c546ce349a5794 --out-dir /opt/rustwide/target/debug/build/brotli/13c546ce349a5794/out -L dependency=/opt/rustwide/target/debug/build/alloc-no-stdlib/60f73069ac7ad1a9/out -L dependency=/opt/rustwide/target/debug/build/alloc-stdlib/edfd581f7d882a3c/out --extern alloc_no_stdlib=/opt/rustwide/target/debug/build/alloc-no-stdlib/60f73069ac7ad1a9/out/liballoc_no_stdlib-60f73069ac7ad1a9.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/build/alloc-stdlib/edfd581f7d882a3c/out/liballoc_stdlib-edfd581f7d882a3c.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/build/brotli-decompressor/ed9151b72428c843/out/libbrotli_decompressor-ed9151b72428c843.rmeta --cap-lints allow --cap-lints=forbid --force-warn=unused_crate_dependencies` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108", kill_on_drop: false }`
[INFO] [stdout] b0cef66c3bd67c07dbfc70e081961d3b0522e83f3a2cbe42dc3bcb96bea3e108