[INFO] cloning repository https://github.com/koisland/rs-cdr-finder
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/koisland/rs-cdr-finder" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-cdr-finder", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-cdr-finder'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7e8b41ddf07f0c03dcc230ef6978935e952f6485
[INFO] checking koisland/rs-cdr-finder against 018018e881e2db0956f229dbb543e21f058d1ce7 for pr-162600
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-cdr-finder" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/koisland/rs-cdr-finder
[INFO] finished tweaking git repo https://github.com/koisland/rs-cdr-finder
[INFO] tweaked toml for git repo https://github.com/koisland/rs-cdr-finder written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/koisland/rs-cdr-finder on toolchain 018018e881e2db0956f229dbb543e21f058d1ce7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+018018e881e2db0956f229dbb543e21f058d1ce7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/koisland/rs-cdr-finder already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+018018e881e2db0956f229dbb543e21f058d1ce7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/nanoporetech/modkit.git`
[INFO] [stderr]     Updating git repository `https://github.com/logsdon-lab/rs-moddotplot.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles v0.96.0
[INFO] [stderr]   Downloaded noodles-core v0.17.0
[INFO] [stderr]   Downloaded rust-lapper v1.2.0
[INFO] [stderr]   Downloaded noodles-fasta v0.51.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.38.0
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded noodles-fasta v0.56.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.43.0
[INFO] [stderr]   Downloaded noodles v0.101.0
[INFO] [stderr]   Downloaded special v0.10.3
[INFO] [stderr]   Downloaded thread-tree v0.3.3
[INFO] [stderr]   Downloaded peroxide-ad v0.3.0
[INFO] [stderr]   Downloaded lru v0.9.0
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded puruspe v0.2.5
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded random_color v1.1.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded typemap-ors v1.0.0
[INFO] [stderr]   Downloaded destructure_traitobject v0.2.0
[INFO] [stderr]   Downloaded mock_instant v0.6.0
[INFO] [stderr]   Downloaded unsafe-any-ors v1.0.0
[INFO] [stderr]   Downloaded thread-id v5.0.0
[INFO] [stderr]   Downloaded log-mdc v0.1.0
[INFO] [stderr]   Downloaded tracing-appender v0.2.4
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded pulp v0.18.22
[INFO] [stderr]   Downloaded log4rs v1.4.0
[INFO] [stderr]   Downloaded log-once v0.4.1
[INFO] [stderr]   Downloaded common_macros v0.1.1
[INFO] [stderr]   Downloaded rv v0.16.0
[INFO] [stderr]   Downloaded peroxide v0.32.1
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded pest_generator v2.8.4
[INFO] [stderr]   Downloaded pest_derive v2.8.4
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded ufmt-macros v0.3.0
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded pest_meta v2.8.4
[INFO] [stderr]   Downloaded index_list v0.2.17
[INFO] [stderr]   Downloaded triple_accel v0.4.0
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[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded libdeflate-sys v0.13.0
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[INFO] [stderr]   Downloaded ufmt v0.2.0
[INFO] [stderr]   Downloaded curl-sys v0.4.84+curl-8.17.0
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[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.4+3.5.4
[INFO] [stderr]   Downloaded bigtools v0.5.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e
[INFO] running `Command { std: "docker" "start" "68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e" "/opt/rustwide/cargo-home/bin/cargo" "+018018e881e2db0956f229dbb543e21f058d1ce7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e" "/opt/rustwide/cargo-home/bin/cargo" "+018018e881e2db0956f229dbb543e21f058d1ce7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling zerocopy v0.8.30
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]     Checking thread-tree v0.3.3
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]     Checking icu_properties v2.1.1
[INFO] [stderr]     Checking indexmap v2.12.1
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking tracing-core v0.1.35
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]    Compiling pest v2.8.4
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling pathfinder_simd v0.5.5
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking iana-time-zone v0.1.64
[INFO] [stderr]     Checking destructure_traitobject v0.2.0
[INFO] [stderr]     Checking futures-util v0.3.31
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]     Checking flate2 v1.1.5
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]    Compiling derive_more-impl v2.0.1
[INFO] [stderr]     Checking unsafe-any-ors v1.0.0
[INFO] [stderr]     Checking deranged v0.5.5
[INFO] [stderr]     Checking getrandom v0.2.16
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]    Compiling pest_meta v2.8.4
[INFO] [stderr]    Compiling cc v1.2.48
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]     Checking dirs-sys-next v0.1.2
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking time-core v0.1.6
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking clap_lex v0.7.6
[INFO] [stderr]    Compiling peroxide v0.32.1
[INFO] [stderr]    Compiling portable-atomic v1.11.1
[INFO] [stderr]    Compiling doc-comment v0.3.4
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking dirs-sys v0.5.0
[INFO] [stderr]     Checking terminal_size v0.4.3
[INFO] [stderr]     Checking clap_builder v4.5.53
[INFO] [stderr]     Checking png v0.17.16
[INFO] [stderr]     Checking rustls-native-certs v0.6.3
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking time v0.3.44
[INFO] [stderr]    Compiling openssl-src v300.5.4+3.5.4
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/018018e881e2db0956f229dbb543e21f058d1ce7/bin/rustc --crate-name syn --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-1.0.109/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat,unused-externs-silent --crate-type lib --emit=dep-info,metadata,link -Z embed-metadata=no -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="quote"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "quote", "test", "visit", "visit-mut"))' -C metadata=d720683a7eb1f0bb -C extra-filename=-6baaaf53e1328f32 --out-dir /opt/rustwide/target/debug/build/syn/6baaaf53e1328f32/out -L dependency=/opt/rustwide/target/debug/build/proc-macro2/43e32a25692bf44a/out -L dependency=/opt/rustwide/target/debug/build/unicode-ident/9533002ac35f5809/out --extern proc_macro2=/opt/rustwide/target/debug/build/proc-macro2/43e32a25692bf44a/out/libproc_macro2-43e32a25692bf44a.rmeta --extern quote=/opt/rustwide/target/debug/build/quote/01cdf4ac6a2aaf5b/out/libquote-01cdf4ac6a2aaf5b.rmeta --extern unicode_ident=/opt/rustwide/target/debug/build/unicode-ident/9533002ac35f5809/out/libunicode_ident-9533002ac35f5809.rmeta --cap-lints allow --cap-lints=forbid --force-warn=unused_crate_dependencies` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e", kill_on_drop: false }`
[INFO] [stdout] 68e1921042feff86ec755313ef4ea941e301103b3876e336a7e07595817b715e
