[INFO] cloning repository https://github.com/rmhubley/BLAST_gapalign
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/rmhubley/BLAST_gapalign" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frmhubley%2FBLAST_gapalign", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frmhubley%2FBLAST_gapalign'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8beb37fa8be0666f90cb1470698728022d16bf98
[INFO] checking rmhubley/BLAST_gapalign against a621e2b446eafb53c7a8569f225e0b8cc2429a68 for pr-162600
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frmhubley%2FBLAST_gapalign" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/rmhubley/BLAST_gapalign
[INFO] finished tweaking git repo https://github.com/rmhubley/BLAST_gapalign
[INFO] tweaked toml for git repo https://github.com/rmhubley/BLAST_gapalign written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/rmhubley/BLAST_gapalign on toolchain a621e2b446eafb53c7a8569f225e0b8cc2429a68
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a621e2b446eafb53c7a8569f225e0b8cc2429a68" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/rmhubley/BLAST_gapalign already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a621e2b446eafb53c7a8569f225e0b8cc2429a68" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking rmhubley/BLAST_gapalign against a621e2b446eafb53c7a8569f225e0b8cc2429a68 for pr-162600
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frmhubley%2FBLAST_gapalign" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/rmhubley/BLAST_gapalign
[INFO] finished tweaking git repo https://github.com/rmhubley/BLAST_gapalign
[INFO] tweaked toml for git repo https://github.com/rmhubley/BLAST_gapalign written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/rmhubley/BLAST_gapalign on toolchain a621e2b446eafb53c7a8569f225e0b8cc2429a68
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a621e2b446eafb53c7a8569f225e0b8cc2429a68" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/rmhubley/BLAST_gapalign already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a621e2b446eafb53c7a8569f225e0b8cc2429a68" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1
[INFO] running `Command { std: "docker" "start" "cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1" "/opt/rustwide/cargo-home/bin/cargo" "+a621e2b446eafb53c7a8569f225e0b8cc2429a68" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1" "/opt/rustwide/cargo-home/bin/cargo" "+a621e2b446eafb53c7a8569f225e0b8cc2429a68" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]     Checking blast_gapalign v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]   --> src/lib.rs:35:15
[INFO] [stdout]    |
[INFO] [stdout] 35 | use std::i32::MIN;
[INFO] [stdout]    |               ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:190:23
[INFO] [stdout]     |
[INFO] [stdout] 190 |                 best: MIN,
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:191:27
[INFO] [stdout]     |
[INFO] [stdout] 191 |                 best_gap: MIN,
[INFO] [stdout]     |                           ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:242:17
[INFO] [stdout]     |
[INFO] [stdout] 242 |         score = MIN;
[INFO] [stdout]     |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:243:33
[INFO] [stdout]     |
[INFO] [stdout] 243 |         let mut score_gap_row = MIN;
[INFO] [stdout]     |                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:254:21
[INFO] [stdout]     |
[INFO] [stdout] 254 |                     MIN
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:261:21
[INFO] [stdout]     |
[INFO] [stdout] 261 |                     MIN
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:320:49
[INFO] [stdout]     |
[INFO] [stdout] 320 |                     score_array[b_index].best = MIN;
[INFO] [stdout]     |                                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:374:35
[INFO] [stdout]     |
[INFO] [stdout] 374 | ...                   best: MIN,
[INFO] [stdout]     |                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:375:39
[INFO] [stdout]     |
[INFO] [stdout] 375 | ...                   best_gap: MIN,
[INFO] [stdout]     |                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:411:40
[INFO] [stdout]     |
[INFO] [stdout] 411 |             score_array[b_size].best = MIN;
[INFO] [stdout]     |                                        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |             score_array[b_size].best_gap = MIN;
[INFO] [stdout]     |                                            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]   --> src/lib.rs:35:15
[INFO] [stdout]    |
[INFO] [stdout] 35 | use std::i32::MIN;
[INFO] [stdout]    |               ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:190:23
[INFO] [stdout]     |
[INFO] [stdout] 190 |                 best: MIN,
[INFO] [stdout]     |                       ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:191:27
[INFO] [stdout]     |
[INFO] [stdout] 191 |                 best_gap: MIN,
[INFO] [stdout]     |                           ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:242:17
[INFO] [stdout]     |
[INFO] [stdout] 242 |         score = MIN;
[INFO] [stdout]     |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:243:33
[INFO] [stdout]     |
[INFO] [stdout] 243 |         let mut score_gap_row = MIN;
[INFO] [stdout]     |                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:254:21
[INFO] [stdout]     |
[INFO] [stdout] 254 |                     MIN
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:261:21
[INFO] [stdout]     |
[INFO] [stdout] 261 |                     MIN
[INFO] [stdout]     |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:320:49
[INFO] [stdout]     |
[INFO] [stdout] 320 |                     score_array[b_index].best = MIN;
[INFO] [stdout]     |                                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:374:35
[INFO] [stdout]     |
[INFO] [stdout] 374 | ...                   best: MIN,
[INFO] [stdout]     |                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:375:39
[INFO] [stdout]     |
[INFO] [stdout] 375 | ...                   best_gap: MIN,
[INFO] [stdout]     |                                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:411:40
[INFO] [stdout]     |
[INFO] [stdout] 411 |             score_array[b_size].best = MIN;
[INFO] [stdout]     |                                        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::i32::MIN`: replaced by the `MIN` associated constant on this type
[INFO] [stdout]    --> src/lib.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |             score_array[b_size].best_gap = MIN;
[INFO] [stdout]     |                                            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] running `Command { std: "docker" "inspect" "cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1", kill_on_drop: false }`
[INFO] [stdout] cac054f6704e73a21c4dc0593fa7c5f4f1937b2f82fd8a2ad775d19f5a35f3f1
