[INFO] cloning repository https://github.com/sriram98v/ml-seqclass [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sriram98v/ml-seqclass" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fml-seqclass", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fml-seqclass'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 82ef715695eb68d9236cf4078a56648a1bab7c30 [INFO] checking sriram98v/ml-seqclass against 018018e881e2db0956f229dbb543e21f058d1ce7 for pr-162597 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fml-seqclass" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/sriram98v/ml-seqclass [INFO] finished tweaking git repo https://github.com/sriram98v/ml-seqclass [INFO] tweaked toml for git repo https://github.com/sriram98v/ml-seqclass written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/sriram98v/ml-seqclass on toolchain 018018e881e2db0956f229dbb543e21f058d1ce7 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+018018e881e2db0956f229dbb543e21f058d1ce7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/sriram98v/ml-seqclass already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+018018e881e2db0956f229dbb543e21f058d1ce7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: binary `seq_class` should have a kebab-case name [INFO] [stderr] | [INFO] [stderr] 1 | /workspace/builds/worker-0-tc1/source/target/.../seq_class [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::non_kebab_case_bins` is set to `warn` by default [INFO] [stderr] help: to change the binary name to `seq-class`, convert `package.name` [INFO] [stderr] --> Cargo.toml:27:8 [INFO] [stderr] | [INFO] [stderr] 27 - name = "seq_class" [INFO] [stderr] 27 + name = "seq-class" [INFO] [stderr] | [INFO] [stderr] help: to change the binary name to `seq-class`, specify `bin.name` [INFO] [stderr] --> Cargo.toml:31:14 [INFO] [stderr] | [INFO] [stderr] 31 ~ debug = true [INFO] [stderr] 32 + [[bin]] [INFO] [stderr] 33 + name = "seq-class" [INFO] [stderr] 34 + path = "src/main.rs" [INFO] [stderr] | [INFO] [stderr] warning: `seq_class` (manifest) generated 1 warning [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded term v0.5.2 [INFO] [stderr] Downloaded dirs v1.0.5 [INFO] [stderr] Downloaded prettytable-rs v0.8.0 [INFO] [stderr] Downloaded unicode-width v0.1.12 [INFO] [stderr] Downloaded format_num v0.1.0 [INFO] [stderr] Downloaded rust-argon2 v0.8.3 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded noisy_float v0.2.0 [INFO] [stderr] Downloaded liblzma v0.3.6 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded anstyle-query v1.0.3 [INFO] [stderr] Downloaded lockfree-object-pool v0.1.6 [INFO] [stderr] Downloaded clap_derive v4.5.4 [INFO] [stderr] Downloaded thiserror-impl v1.0.60 [INFO] [stderr] Downloaded either v1.11.0 [INFO] [stderr] Downloaded pest_derive v2.7.15 [INFO] [stderr] Downloaded pest_generator v2.7.15 [INFO] [stderr] Downloaded rustversion v1.0.16 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded thiserror v1.0.60 [INFO] [stderr] Downloaded py_literal v0.4.0 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded blake2b_simd v0.5.11 [INFO] [stderr] Downloaded ndarray-npy v0.9.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded pest_meta v2.7.15 [INFO] [stderr] Downloaded zopfli v0.8.1 [INFO] [stderr] Downloaded ndarray-stats v0.6.0 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded wide v0.7.17 [INFO] [stderr] Downloaded bytemuck v1.15.0 [INFO] [stderr] Downloaded clap v4.5.4 [INFO] [stderr] Downloaded jiff-static v0.2.15 [INFO] [stderr] Downloaded cc v1.0.97 [INFO] [stderr] Downloaded zip v2.4.1 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded needletail v0.6.3 [INFO] [stderr] Downloaded jiff v0.2.15 [INFO] [stderr] Downloaded liblzma-sys v0.3.13 [INFO] [stderr] Downloaded shrust v0.0.7 [INFO] [stderr] Downloaded libsufr v0.7.12 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be [INFO] running `Command { std: "docker" "start" "b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be" "/opt/rustwide/cargo-home/bin/cargo" "+018018e881e2db0956f229dbb543e21f058d1ce7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be" "/opt/rustwide/cargo-home/bin/cargo" "+018018e881e2db0956f229dbb543e21f058d1ce7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] warning: binary `seq_class` should have a kebab-case name [INFO] [stderr] | [INFO] [stderr] 1 | /opt/rustwide/target/.../seq_class [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::non_kebab_case_bins` is set to `warn` by default [INFO] [stderr] help: to change the binary name to `seq-class`, convert `package.name` [INFO] [stderr] --> Cargo.toml:27:8 [INFO] [stderr] | [INFO] [stderr] 27 - name = "seq_class" [INFO] [stderr] 27 + name = "seq-class" [INFO] [stderr] | [INFO] [stderr] help: to change the binary name to `seq-class`, specify `bin.name` [INFO] [stderr] --> Cargo.toml:31:14 [INFO] [stderr] | [INFO] [stderr] 31 ~ debug = true [INFO] [stderr] 32 + [[bin]] [INFO] [stderr] 33 + name = "seq-class" [INFO] [stderr] 34 + path = "src/main.rs" [INFO] [stderr] | [INFO] [stderr] warning: `seq_class` (manifest) generated 1 warning [INFO] [stderr] Compiling once_cell v1.21.1 [INFO] [stderr] Checking memchr v2.7.2 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking either v1.11.0 [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Checking utf8parse v0.2.1 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking log v0.4.26 [INFO] [stderr] Checking bytemuck v1.15.0 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking miniz_oxide v0.8.5 [INFO] [stderr] Checking anstyle-parse v0.2.4 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.16 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking anstyle-query v1.0.3 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Compiling thiserror v1.0.60 [INFO] [stderr] Checking anstream v0.6.14 [INFO] [stderr] Compiling rustix v1.0.8 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking unicode-width v0.1.12 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rayon-core v1.12.1 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking wide v0.7.17 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Checking flate2 v1.1.2 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking dirs v1.0.5 [INFO] [stderr] Checking linux-raw-sys v0.9.4 [INFO] [stderr] Checking bumpalo v3.17.0 [INFO] [stderr] Checking indexmap v2.10.0 [INFO] [stderr] Checking lockfree-object-pool v0.1.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking simd-adler32 v0.3.7 [INFO] [stderr] Compiling zip v2.4.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking bitflags v2.9.1 [INFO] [stderr] Checking zopfli v0.8.1 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking term v0.5.2 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Compiling cc v1.0.97 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Checking encode_unicode v0.3.6 [INFO] [stderr] Checking clap_lex v0.7.0 [INFO] [stderr] Checking jiff v0.2.15 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking papergrid v0.17.0 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking clap_builder v4.5.2 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Compiling zstd-sys v2.0.15+zstd.1.5.7 [INFO] [stderr] Checking regex v1.11.1 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling liblzma-sys v0.3.13 [INFO] [stderr] Checking env_filter v0.1.3 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking format_num v0.1.0 [INFO] [stderr] Checking tempfile v3.20.0 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Checking noisy_float v0.2.0 [INFO] [stderr] Checking liblzma v0.3.6 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking console v0.15.8 [INFO] [stderr] Checking testing_table v0.3.0 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking thread_local v1.1.9 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking smawk v0.3.2 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking itertools v0.12.1 [INFO] [stderr] Checking textwrap v0.16.2 [INFO] [stderr] Checking indicatif v0.17.8 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking ndarray-stats v0.6.0 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking env_logger v0.11.8 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.60 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling tabled_derive v0.11.0 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking needletail v0.6.3 [INFO] [stderr] Checking tabled v0.20.0 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Compiling pest v2.7.15 [INFO] [stderr] Checking clap v4.5.4 [INFO] [stderr] Checking serde v1.0.219 [INFO] [stderr] Compiling pest_meta v2.7.15 [INFO] [stderr] Compiling pest_generator v2.7.15 [INFO] [stderr] Compiling pest_derive v2.7.15 [INFO] [stderr] Checking py_literal v0.4.0 [INFO] [stderr] Checking ndarray-npy v0.9.1 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking prettytable-rs v0.8.0 [INFO] [stderr] Checking libsufr v0.7.12 [INFO] [stderr] Checking shrust v0.0.7 [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v3.0.0 [INFO] [stderr] Checking seq_class v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unused dependency `ndarray-npy` [INFO] [stderr] --> Cargo.toml:10:1 [INFO] [stderr] | [INFO] [stderr] 10 | ndarray-npy = "0.9.1" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `cargo::unused_dependencies` is set to `warn` by default [INFO] [stderr] help: consider removing the dependency on `ndarray-npy` [INFO] [stderr] warning: `seq_class` (manifest) generated 1 warning [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 07s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3` [INFO] running `Command { std: "docker" "inspect" "b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be", kill_on_drop: false }` [INFO] [stdout] b23fb2203e01dfc279b8a3f06ace08b27d8d8c7cb469a9bf1f941a7490f513be