[INFO] fetching crate gosh-model 0.2.1...
[INFO] checking gosh-model-0.2.1 against eca445e5ae4a6679cc27d3a09106ce245e13a5a6 for pr-162478
[INFO] extracting crate gosh-model 0.2.1 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate gosh-model 0.2.1
[INFO] finished tweaking crates.io crate gosh-model 0.2.1
[INFO] tweaked toml for crates.io crate gosh-model 0.2.1 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate gosh-model 0.2.1 on toolchain eca445e5ae4a6679cc27d3a09106ce245e13a5a6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 236 packages to highest compatible versions
[INFO] [stderr]       Adding bitflags v1.2.1 (available: v1.3.2)
[INFO] [stderr]       Adding bstr v0.2.17 (available: v1.13.1)
[INFO] [stderr]       Adding duct v0.13.7 (available: v1.1.2)
[INFO] [stderr]       Adding handlebars v4.0.1 (available: v4.5.0)
[INFO] [stderr]       Adding nix v0.20.2 (available: v0.31.3)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:39:12
[INFO] [stderr]    |
[INFO] [stderr] 39 | homepage = "https://github.com/gosh-rs/gosh-model"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 42 | repository = "https://github.com/gosh-rs/gosh-model"
[INFO] [stderr]    |              ---------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `gosh-model` (manifest) generated 1 warning
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded grep-matcher v0.1.9
[INFO] [stderr]   Downloaded grep v0.2.13
[INFO] [stderr]   Downloaded grep-searcher v0.1.17
[INFO] [stderr]   Downloaded gosh-core v0.2.0
[INFO] [stderr]   Downloaded grep-regex v0.1.14
[INFO] [stderr]   Downloaded grep-printer v0.1.7
[INFO] [stderr]   Downloaded encoding_rs_io v0.1.8
[INFO] [stderr]   Downloaded grep-cli v0.1.12
[INFO] [stderr]   Downloaded gchemol-parser v0.4.6
[INFO] [stderr]   Downloaded gchemol v0.1.7
[INFO] [stderr]   Downloaded uom v0.33.0
[INFO] [stderr]   Downloaded gchemol-readwrite v0.1.12
[INFO] [stderr]   Downloaded lazy-regex v2.5.0
[INFO] [stderr]   Downloaded lazy-regex-proc_macros v2.4.1
[INFO] [stderr]   Downloaded gchemol-core v0.1.7
[INFO] [stderr]   Downloaded minijinja v1.0.22
[INFO] [stderr]   Downloaded grep v0.3.2
[INFO] [stderr]   Downloaded envfile v0.2.1
[INFO] [stderr]   Downloaded handlebars v4.0.1
[INFO] [stderr]   Downloaded grep-reader v0.1.3
[INFO] [stderr]   Downloaded grep-printer v0.2.2
[INFO] [stderr]   Downloaded gchemol-gut v0.3.1
[INFO] [stderr]   Downloaded extxyz v0.2.0
[INFO] [stderr]   Downloaded snailquote v0.2.0
[INFO] [stderr]   Downloaded edip v0.1.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b
[INFO] running `Command { std: "docker" "start" "71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b" "/opt/rustwide/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b" "/opt/rustwide/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:39:12
[INFO] [stderr]    |
[INFO] [stderr] 39 | homepage = "https://github.com/gosh-rs/gosh-model"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 42 | repository = "https://github.com/gosh-rs/gosh-model"
[INFO] [stderr]    |              ---------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `gosh-model` (manifest) generated 1 warning
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]    Compiling signal-hook v0.4.4
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[INFO] [stderr]     Checking os_pipe v1.2.3
[INFO] [stderr]    Compiling multiversion-macros v0.9.0
[INFO] [stderr]    Compiling encoding_rs v0.8.41
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking indexmap v2.14.2
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling aho-corasick v1.1.5
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[INFO] [stderr]    Compiling multiversion_no_op v1.0.0
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking core_detect v1.0.0
[INFO] [stderr]     Checking grep-matcher v0.1.9
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[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
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[INFO] [stderr]     Checking rand_core v0.6.4
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[INFO] [stderr]     Checking serde_spanned v0.6.9
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[INFO] [stderr]     Checking envy v0.4.2
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[INFO] [stderr]    Compiling pest_meta v2.9.1
[INFO] [stderr]     Checking roxmltree v0.18.1
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[INFO] [stderr]     Checking envfile v0.2.1
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking gchemol-graph v0.1.6
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]     Checking bstr v1.13.1
[INFO] [stderr]     Checking regex v1.13.1
[INFO] [stderr]    Compiling pest_generator v2.9.1
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking env_logger v0.9.3
[INFO] [stderr]     Checking toml v0.7.8
[INFO] [stderr]     Checking clap v3.2.25
[INFO] [stderr]     Checking globset v0.4.20
[INFO] [stderr]     Checking grep-searcher v0.1.17
[INFO] [stderr]     Checking grep-regex v0.1.14
[INFO] [stderr]     Checking gchemol-gut v0.4.4
[INFO] [stderr]     Checking grep-cli v0.1.12
[INFO] [stderr]     Checking ignore v0.4.33
[INFO] [stderr]     Checking grep-printer v0.2.2
[INFO] [stderr]     Checking grep-printer v0.1.7
[INFO] [stderr]    Compiling pest_derive v2.9.1
[INFO] [stderr]     Checking handlebars v4.0.1
[INFO] [stderr]     Checking globwalk v0.9.1
[INFO] [stderr]     Checking grep v0.3.2
[INFO] [stderr]     Checking grep v0.2.13
[INFO] [stderr]     Checking grep-reader v0.1.3
[INFO] [stderr]     Checking gchemol-parser v0.4.6
[INFO] [stderr]     Checking extxyz v0.2.0
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.1
[INFO] [stderr]    Compiling lazy-regex-proc_macros v2.4.1
[INFO] [stderr]    Compiling chrono-tz-build v0.3.0
[INFO] [stderr]     Checking lazy-regex v2.5.0
[INFO] [stderr]     Checking nalgebra v0.31.4
[INFO] [stderr]     Checking gchemol-gut v0.3.1
[INFO] [stderr]    Compiling chrono-tz v0.9.0
[INFO] [stderr]     Checking tera v1.20.1
[INFO] [stderr]     Checking vecfx v0.1.6
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-lattice v0.1.2
[INFO] [stderr]     Checking gchemol-geometry v0.1.1
[INFO] [stderr]     Checking edip v0.1.1
[INFO] [stderr]     Checking gchemol-neighbors v0.1.3
[INFO] [stderr]     Checking gchemol-core v0.1.7
[INFO] [stderr]     Checking gchemol-readwrite v0.1.12
[INFO] [stderr]     Checking gchemol v0.1.7
[INFO] [stderr]     Checking gosh-core v0.2.0
[INFO] [stderr]     Checking gosh-model v0.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated method `tempfile::TempDir::into_path`: use TempDir::keep()
[INFO] [stdout]    --> src/blackbox.rs:271:29
[INFO] [stdout]     |
[INFO] [stdout] 271 |             let path = tdir.into_path();
[INFO] [stdout]     |                             ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `tempfile::TempDir::into_path`: use TempDir::keep()
[INFO] [stdout]    --> src/blackbox.rs:271:29
[INFO] [stdout]     |
[INFO] [stdout] 271 |             let path = tdir.into_path();
[INFO] [stdout]     |                             ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `energy`
[INFO] [stdout]    --> src/edip.rs:128:9
[INFO] [stdout]     |
[INFO] [stdout] 128 |     let energy = computed.get_energy().unwrap();
[INFO] [stdout]     |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_energy`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `job_dir` is never read
[INFO] [stdout]   --> src/blackbox.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub struct BlackBoxModel {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 48 |     job_dir: Option<PathBuf>,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `bash_script` and `generate_bash_script` are never used
[INFO] [stdout]   --> src/blackbox/cmd.rs:70:12
[INFO] [stdout]    |
[INFO] [stdout] 68 | impl Cmd {
[INFO] [stdout]    | -------- methods in this implementation
[INFO] [stdout] 69 |     /// Return bash script.
[INFO] [stdout] 70 |     pub fn bash_script(&self) -> String {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 96 |     pub fn generate_bash_script(&self, path: &Path) -> Result<()> {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `job_dir` is never read
[INFO] [stdout]   --> src/blackbox.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub struct BlackBoxModel {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 48 |     job_dir: Option<PathBuf>,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `bash_script` and `generate_bash_script` are never used
[INFO] [stdout]   --> src/blackbox/cmd.rs:70:12
[INFO] [stdout]    |
[INFO] [stdout] 68 | impl Cmd {
[INFO] [stdout]    | -------- methods in this implementation
[INFO] [stdout] 69 |     /// Return bash script.
[INFO] [stdout] 70 |     pub fn bash_script(&self) -> String {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 96 |     pub fn generate_bash_script(&self, path: &Path) -> Result<()> {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `search_radius` should have an upper case name
[INFO] [stdout]   --> src/edip.rs:32:15
[INFO] [stdout]    |
[INFO] [stdout] 32 |         const search_radius: f64 = 4.0;
[INFO] [stdout]    |               ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_upper_case_globals)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] help: convert the identifier to upper case
[INFO] [stdout]    |
[INFO] [stdout] 32 -         const search_radius: f64 = 4.0;
[INFO] [stdout] 32 +         const SEARCH_RADIUS: f64 = 4.0;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `search_radius` should have an upper case name
[INFO] [stdout]   --> src/edip.rs:32:15
[INFO] [stdout]    |
[INFO] [stdout] 32 |         const search_radius: f64 = 4.0;
[INFO] [stdout]    |               ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_upper_case_globals)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] help: convert the identifier to upper case
[INFO] [stdout]    |
[INFO] [stdout] 32 -         const search_radius: f64 = 4.0;
[INFO] [stdout] 32 +         const SEARCH_RADIUS: f64 = 4.0;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] warning: unused dependency `bstr`
[INFO] [stderr]  --> Cargo.toml:1:15
[INFO] [stderr]   |
[INFO] [stderr] 1 | [dependencies.bstr]
[INFO] [stderr]   |               ^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `bstr`
[INFO] [stderr] warning: `gosh-model` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 47.48s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: gchemol-core v0.1.7, gchemol-readwrite v0.1.12
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 9`
[INFO] running `Command { std: "docker" "inspect" "71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b", kill_on_drop: false }`
[INFO] [stdout] 71335dd7eb311e7eeb4ca4f61a459948478620974bc0b87e0d89004758ca561b
