[INFO] cloning repository https://github.com/Softleif/seqair
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Softleif/seqair" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSoftleif%2Fseqair", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSoftleif%2Fseqair'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e76eae2b68788a24993856a900c690d098290fb4
[INFO] checking Softleif/seqair against eca445e5ae4a6679cc27d3a09106ce245e13a5a6 for pr-162478
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSoftleif%2Fseqair" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc1/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/Softleif/seqair
[INFO] finished tweaking git repo https://github.com/Softleif/seqair
[INFO] tweaked toml for git repo https://github.com/Softleif/seqair written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Softleif/seqair on toolchain eca445e5ae4a6679cc27d3a09106ce245e13a5a6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Softleif/seqair already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `color-eyre`
[INFO] [stderr]   --> Cargo.toml:43:1
[INFO] [stderr]    |
[INFO] [stderr] 43 | color-eyre = "0.6.5"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `color-eyre`
[INFO] [stderr] warning: workspace (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/seqair-types/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `seqair-types` (manifest) generated 1 warning
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded smallvec v2.0.0-alpha.13
[INFO] [stderr]   Downloaded borsh v1.8.1
[INFO] [stderr]   Downloaded smol_str v0.3.6
[INFO] [stderr]   Downloaded smallvec v1.16.0
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded noodles-core v0.20.0
[INFO] [stderr]   Downloaded noodles-fastq v0.23.0
[INFO] [stderr]   Downloaded cstr8 v0.1.4
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded strip-ansi-escapes v0.2.1
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded bgzf v0.3.0
[INFO] [stderr]   Downloaded lexical-core v1.0.6
[INFO] [stderr]   Downloaded noodles-util v0.79.0
[INFO] [stderr]   Downloaded noodles-fasta v0.61.0
[INFO] [stderr]   Downloaded noodles v0.110.0
[INFO] [stderr]   Downloaded noodles-tabix v0.62.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded buffer-redux v1.1.0
[INFO] [stderr]   Downloaded md-5 v0.11.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded seq_io v0.3.2
[INFO] [stderr]   Downloaded noodles-csi v0.56.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.47.0
[INFO] [stderr]   Downloaded bzip2 v0.6.1
[INFO] [stderr]   Downloaded libdeflater v1.26.0
[INFO] [stderr]   Downloaded hybrid-array v0.4.15
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.6
[INFO] [stderr]   Downloaded clang-sys v1.9.1
[INFO] [stderr]   Downloaded crc32fast v1.5.1
[INFO] [stderr]   Downloaded libbz2-rs-sys v0.2.5
[INFO] [stderr]   Downloaded vte v0.14.1
[INFO] [stderr]   Downloaded noodles-bcf v0.86.0
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.6
[INFO] [stderr]   Downloaded md5 v0.8.1
[INFO] [stderr]   Downloaded rust-htslib v1.0.1
[INFO] [stderr]   Downloaded noodles-bam v0.89.0
[INFO] [stderr]   Downloaded cc v1.4.5
[INFO] [stderr]   Downloaded lexical-util v1.0.7
[INFO] [stderr]   Downloaded noodles-sam v0.85.0
[INFO] [stderr]   Downloaded lexical-write-float v1.0.6
[INFO] [stderr]   Downloaded noodles-vcf v0.88.0
[INFO] [stderr]   Downloaded noodles-cram v0.93.0
[INFO] [stderr]   Downloaded libdeflate-sys v1.26.0
[INFO] [stderr]   Downloaded proptest v1.11.0
[INFO] [stderr]   Downloaded bindgen v0.72.1
[INFO] [stderr]   Downloaded lzma-rust2 v0.16.5
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded libz-sys v1.1.29
[INFO] [stderr]   Downloaded hts-sys v2.2.1
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2
[INFO] running `Command { std: "docker" "start" "a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2" "/opt/rustwide/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2" "/opt/rustwide/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `color-eyre`
[INFO] [stderr]   --> Cargo.toml:43:1
[INFO] [stderr]    |
[INFO] [stderr] 43 | color-eyre = "0.6.5"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `color-eyre`
[INFO] [stderr] warning: workspace (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/seqair-types/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `seqair-types` (manifest) generated 1 warning
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling pkg-config v0.3.34
[INFO] [stderr]     Checking zlib-rs v0.6.7
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]     Checking bytes v1.12.1
[INFO] [stderr]     Checking bstr v1.13.1
[INFO] [stderr]     Checking bitflags v2.13.2
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking typenum v1.20.1
[INFO] [stderr]    Compiling zerocopy v0.8.57
[INFO] [stderr]    Compiling serde v1.0.229
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]     Checking hashbrown v0.17.1
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling syn v3.0.5
[INFO] [stderr]     Checking crossbeam-channel v0.5.17
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]    Compiling glob v0.3.4
[INFO] [stderr]    Compiling crc32fast v1.5.1
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]     Checking litemap v0.8.3
[INFO] [stderr]    Compiling clang-sys v1.9.1
[INFO] [stderr]     Checking writeable v0.6.4
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking aho-corasick v1.1.5
[INFO] [stderr]     Checking noodles-core v0.20.0
[INFO] [stderr]     Checking utf8_iter v1.0.4
[INFO] [stderr]     Checking simd-adler32 v0.3.10
[INFO] [stderr]     Checking const-oid v0.10.2
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling memchr v2.8.3
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]    Compiling icu_properties_data v2.3.0
[INFO] [stderr]    Compiling icu_normalizer_data v2.3.0
[INFO] [stderr]     Checking miniz_oxide v0.9.1
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking indexmap v2.14.2
[INFO] [stderr]    Compiling either v1.18.0
[INFO] [stderr]    Compiling bindgen v0.72.1
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]     Checking flate2 v1.1.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking hybrid-array v0.4.15
[INFO] [stderr]     Checking smallvec v1.16.0
[INFO] [stderr]    Compiling rustc-hash v2.1.3
[INFO] [stderr]     Checking libbz2-rs-sys v0.2.5
[INFO] [stderr]    Compiling rustversion v1.0.23
[INFO] [stderr]    Compiling cc v1.4.5
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]     Checking cpufeatures v0.3.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking anstream v1.0.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking bzip2 v0.6.1
[INFO] [stderr]     Checking crypto-common v0.2.2
[INFO] [stderr]     Checking block-buffer v0.12.1
[INFO] [stderr]     Checking vte v0.14.1
[INFO] [stderr]     Checking clap_lex v1.1.0
[INFO] [stderr]     Checking winnow v1.0.4
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking plotters-backend v0.3.7
[INFO] [stderr]     Checking smallvec v2.0.0-alpha.13
[INFO] [stderr]     Checking smol_str v0.3.6
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking plotters-svg v0.3.7
[INFO] [stderr]     Checking serde_json v1.0.151
[INFO] [stderr]     Checking clap_builder v4.6.6
[INFO] [stderr]     Checking strip-ansi-escapes v0.2.1
[INFO] [stderr]     Checking rand_xorshift v0.4.0
[INFO] [stderr]     Checking rand v0.9.5
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking console v0.16.6
[INFO] [stderr]     Checking buffer-redux v1.1.0
[INFO] [stderr]     Checking similar v2.7.0
[INFO] [stderr]     Checking digest v0.11.3
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]     Checking sha2 v0.11.0
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking md-5 v0.11.0
[INFO] [stderr]     Checking rusty-fork v0.3.1
[INFO] [stderr]    Compiling anyhow v1.0.104
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking noodles-fastq v0.23.0
[INFO] [stderr]     Checking page_size v0.6.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking md5 v0.8.1
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking scoped_threadpool v0.1.9
[INFO] [stderr]     Checking needletail v0.6.3
[INFO] [stderr]     Checking cstr8 v0.1.4
[INFO] [stderr]    Compiling libdeflate-sys v1.26.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]     Checking lzma-rust2 v0.16.5
[INFO] [stderr]    Compiling regex v1.13.1
[INFO] [stderr]    Compiling alloca v0.4.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking insta v1.48.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking criterion-plot v0.8.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.6
[INFO] [stderr]    Compiling displaydoc v0.2.7
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling bytemuck_derive v1.12.0
[INFO] [stderr]    Compiling clap_derive v4.6.4
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]     Checking thiserror v2.0.20
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling zerocopy-derive v0.8.57
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking clap v4.6.6
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking zerofrom v0.1.8
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking yoke v0.8.3
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking zerovec v0.11.8
[INFO] [stderr]     Checking zerotrie v0.2.5
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking libdeflater v1.26.0
[INFO] [stderr]     Checking tinystr v0.8.4
[INFO] [stderr]     Checking potential_utf v0.1.6
[INFO] [stderr]     Checking noodles-bgzf v0.47.0
[INFO] [stderr]     Checking bgzf v0.3.0
[INFO] [stderr]     Checking icu_collections v2.3.0
[INFO] [stderr]     Checking icu_locale_core v2.3.0
[INFO] [stderr]     Checking noodles-csi v0.56.0
[INFO] [stderr]     Checking noodles-fasta v0.61.0
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking seqair-types v0.2.0 (/opt/rustwide/workdir/crates/seqair-types)
[INFO] [stderr]     Checking seq_io v0.3.2
[INFO] [stderr]     Checking noodles-sam v0.85.0
[INFO] [stderr]     Checking noodles-tabix v0.62.0
[INFO] [stderr]     Checking icu_provider v2.3.1
[INFO] [stderr]     Checking noodles-vcf v0.88.0
[INFO] [stderr]     Checking icu_properties v2.3.0
[INFO] [stderr]     Checking icu_normalizer v2.3.0
[INFO] [stderr]     Checking seqair v0.2.0 (/opt/rustwide/workdir/crates/seqair)
[INFO] [stderr]    Compiling hts-sys v2.2.1
[INFO] [stderr]     Checking noodles-bam v0.89.0
[INFO] [stderr]     Checking idna_adapter v1.2.2
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking noodles-bcf v0.86.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking noodles-cram v0.93.0
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking proptest v1.11.0
[INFO] [stderr]     Checking criterion v0.8.2
[INFO] [stderr]     Checking noodles v0.110.0
[INFO] [stderr]     Checking noodles-util v0.79.0
[INFO] [stderr]     Checking rust-htslib v1.0.1
[INFO] [stderr] warning: unused dependency `ryu`
[INFO] [stderr]   --> crates/seqair/Cargo.toml:25:1
[INFO] [stderr]    |
[INFO] [stderr] 25 | ryu = "1"
[INFO] [stderr]    | ^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `ryu`
[INFO] [stderr] warning: `seqair` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 25s
[INFO] running `Command { std: "docker" "inspect" "a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2", kill_on_drop: false }`
[INFO] [stdout] a13d1203c84f70b90dd3b95860f1a5eee1b1153e557d70fa42d6e1a0b30f07d2
