[INFO] cloning repository https://github.com/Laboratory-of-molecular-epidemiology/panDPT
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Laboratory-of-molecular-epidemiology/panDPT" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLaboratory-of-molecular-epidemiology%2FpanDPT", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLaboratory-of-molecular-epidemiology%2FpanDPT'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 291c506197eb1b3e78f029462af13d40053f6d12
[INFO] checking Laboratory-of-molecular-epidemiology/panDPT against eca445e5ae4a6679cc27d3a09106ce245e13a5a6 for pr-162478
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLaboratory-of-molecular-epidemiology%2FpanDPT" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Laboratory-of-molecular-epidemiology/panDPT
[INFO] finished tweaking git repo https://github.com/Laboratory-of-molecular-epidemiology/panDPT
[INFO] tweaked toml for git repo https://github.com/Laboratory-of-molecular-epidemiology/panDPT written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Laboratory-of-molecular-epidemiology/panDPT on toolchain eca445e5ae4a6679cc27d3a09106ce245e13a5a6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Laboratory-of-molecular-epidemiology/panDPT already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded cubecl-cuda v0.9.0
[INFO] [stderr]   Downloaded cubecl-common v0.9.0
[INFO] [stderr]   Downloaded no-std-compat v0.2.0
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded jiff-static v0.2.23
[INFO] [stderr]   Downloaded env_logger v0.11.9
[INFO] [stderr]   Downloaded cubecl-ir v0.9.0
[INFO] [stderr]   Downloaded float8 v0.4.2
[INFO] [stderr]   Downloaded cubecl-wgpu v0.9.0
[INFO] [stderr]   Downloaded cubecl-opt v0.9.0
[INFO] [stderr]   Downloaded wgpu-types v26.0.0
[INFO] [stderr]   Downloaded wgpu-core-deps-emscripten v26.0.0
[INFO] [stderr]   Downloaded wgpu-core-deps-apple v26.0.0
[INFO] [stderr]   Downloaded float4 v0.1.0
[INFO] [stderr]   Downloaded wgpu-core-deps-windows-linux-android v26.0.0
[INFO] [stderr]   Downloaded tracel-llvm-bundler v20.1.4-7
[INFO] [stderr]   Downloaded cubecl v0.9.0
[INFO] [stderr]   Downloaded cubecl-hip v0.9.0
[INFO] [stderr]   Downloaded cubecl-runtime v0.9.0
[INFO] [stderr]   Downloaded cubecl-cpp v0.9.0
[INFO] [stderr]   Downloaded cubecl-core v0.9.0
[INFO] [stderr]   Downloaded wgpu v26.0.1
[INFO] [stderr]   Downloaded liblzma v0.4.6
[INFO] [stderr]   Downloaded cudarc v0.18.2
[INFO] [stderr]   Downloaded wgpu-hal v26.0.6
[INFO] [stderr]   Downloaded cubecl-macros-internal v0.9.0
[INFO] [stderr]   Downloaded tracel-mlir-sys v20.1.4-7
[INFO] [stderr]   Downloaded slug v0.1.6
[INFO] [stderr]   Downloaded constcat v0.6.1
[INFO] [stderr]   Downloaded tracel-llvm v20.1.4-7
[INFO] [stderr]   Downloaded caseless v0.2.2
[INFO] [stderr]   Downloaded tracel-mlir-rs v20.1.4-7
[INFO] [stderr]   Downloaded cubecl-hip-sys v7.1.5280200
[INFO] [stderr]   Downloaded tracel-tblgen-rs v20.1.4-7
[INFO] [stderr]   Downloaded comrak v0.39.1
[INFO] [stderr]   Downloaded jiff v0.2.23
[INFO] [stderr]   Downloaded bindgen v0.71.1
[INFO] [stderr]   Downloaded sysinfo v0.36.1
[INFO] [stderr]   Downloaded wgpu-core v26.0.1
[INFO] [stderr]   Downloaded entities v1.0.1
[INFO] [stderr]   Downloaded naga v26.0.0
[INFO] [stderr]   Downloaded clap_complete v4.5.66
[INFO] [stderr]   Downloaded cubecl-cpu v0.9.0
[INFO] [stderr]   Downloaded minijinja v2.17.1
[INFO] [stderr]   Downloaded env_filter v1.0.0
[INFO] [stderr]   Downloaded liblzma-sys v0.4.5
[INFO] [stderr]   Downloaded cubecl-std v0.9.0
[INFO] [stderr]   Downloaded stable-vec v0.4.1
[INFO] [stderr]   Downloaded cubecl-macros v0.9.0
[INFO] [stderr]   Downloaded cubecl-zspace v0.9.0
[INFO] [stderr]   Downloaded tracel-mlir-rs-macros v20.1.4-7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d
[INFO] running `Command { std: "docker" "start" "fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d" "/opt/rustwide/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d" "/opt/rustwide/cargo-home/bin/cargo" "+eca445e5ae4a6679cc27d3a09106ce245e13a5a6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]     Checking memchr v2.8.0
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking colorchoice v1.0.4
[INFO] [stderr]     Checking anstyle-query v1.1.5
[INFO] [stderr]     Checking simd-adler32 v0.3.8
[INFO] [stderr]     Checking clap_lex v1.0.0
[INFO] [stderr]     Checking glob v0.3.3
[INFO] [stderr]     Checking jiff v0.2.23
[INFO] [stderr]     Checking rustc-hash v2.1.1
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling libc v0.2.182
[INFO] [stderr]     Checking bitflags v2.11.0
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling nix v0.31.2
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]     Checking once_cell v1.21.3
[INFO] [stderr]     Checking fastrand v2.3.0
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking clap_builder v4.5.60
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking ctrlc v3.5.2
[INFO] [stderr]     Checking tempfile v3.26.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking env_filter v1.0.0
[INFO] [stderr]     Checking pandpt-seq v0.1.0 (/opt/rustwide/workdir/crates/pandpt-seq)
[INFO] [stderr]     Checking env_logger v0.11.9
[INFO] [stderr]     Checking clap v4.5.60
[INFO] [stderr]     Checking pandpt-search v0.1.0 (/opt/rustwide/workdir/crates/pandpt-search)
[INFO] [stderr]     Checking pandpt-cluster v0.1.0 (/opt/rustwide/workdir/crates/pandpt-cluster)
[INFO] [stderr]     Checking clap_complete v4.5.66
[INFO] [stderr]     Checking pandpt-thermo v0.1.0 (/opt/rustwide/workdir/crates/pandpt-thermo)
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking minijinja v2.17.1
[INFO] [stderr]     Checking primer-tenz v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused dependency `serde_json`
[INFO] [stderr]   --> crates/pandpt-thermo/Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | serde_json = "1"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `serde_json`
[INFO] [stderr] warning: `pandpt-thermo` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.12s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nix v0.31.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d", kill_on_drop: false }`
[INFO] [stdout] fc77a63778dd2d561969d203788d5d6481feddd1bd050931a3c6e31b7803d72d
