[INFO] fetching crate microbiorust-py 0.1.6...
[INFO] checking microbiorust-py-0.1.6 against d8df82673d5911b6112a85bf91d9adefb2c66a1a for pr-162242
[INFO] extracting crate microbiorust-py 0.1.6 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate microbiorust-py 0.1.6
[INFO] finished tweaking crates.io crate microbiorust-py 0.1.6
[INFO] tweaked toml for crates.io crate microbiorust-py 0.1.6 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate microbiorust-py 0.1.6 on toolchain d8df82673d5911b6112a85bf91d9adefb2c66a1a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate microbiorust-py 0.1.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]   --> Cargo.toml:54:1
[INFO] [stderr]    |
[INFO] [stderr] 54 | readme = "README.md"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `microbiorust-py` (manifest) generated 1 warning
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded pythonize v0.26.0
[INFO] [stderr]   Downloaded pyo3-macros v0.26.0
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.26.0
[INFO] [stderr]   Downloaded unic-ucd-ident v0.9.0
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded unicode_names2_generator v1.3.0
[INFO] [stderr]   Downloaded unic-emoji-char v0.9.0
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded is-macro v0.3.7
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded lalrpop-util v0.20.2
[INFO] [stderr]   Downloaded rustpython-parser-vendored v0.4.0
[INFO] [stderr]   Downloaded protein-translate v0.2.0
[INFO] [stderr]   Downloaded rustpython-parser-core v0.4.0
[INFO] [stderr]   Downloaded ordered-float v5.1.0
[INFO] [stderr]   Downloaded rustpython-ast v0.4.0
[INFO] [stderr]   Downloaded microBioRust-seqmetrics v0.1.3
[INFO] [stderr]   Downloaded pyo3-build-config v0.26.0
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.17.2
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.17.2
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded microBioRust v0.1.4
[INFO] [stderr]   Downloaded safe_arch v0.7.4
[INFO] [stderr]   Downloaded pyo3-ffi v0.26.0
[INFO] [stderr]   Downloaded numpy v0.26.0
[INFO] [stderr]   Downloaded wide v0.7.33
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded rustpython-parser v0.4.0
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded unicode_names2 v1.3.0
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded pyo3 v0.26.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d
[INFO] running `Command { std: "docker" "start" "e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d" "/opt/rustwide/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d" "/opt/rustwide/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]   --> Cargo.toml:54:1
[INFO] [stderr]    |
[INFO] [stderr] 54 | readme = "README.md"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `microbiorust-py` (manifest) generated 1 warning
[INFO] [stderr]    Compiling libc v0.2.183
[INFO] [stderr]    Compiling zerocopy v0.8.42
[INFO] [stderr]    Compiling target-lexicon v0.13.5
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling siphasher v1.0.3
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling pyo3-build-config v0.26.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling getopts v0.2.24
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling tiny-keccak v2.0.2
[INFO] [stderr]     Checking regex-syntax v0.8.10
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling pyo3-ffi v0.26.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.26.0
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking errno v0.3.14
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]    Compiling memoffset v0.9.1
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[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling once_cell v1.21.4
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling unic-common v0.9.0
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[INFO] [stderr]     Checking either v1.15.0
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[INFO] [stderr]     Checking rand_chacha v0.3.1
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[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling pyo3 v0.26.0
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling futures-macro v0.3.32
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling is-macro v0.3.7
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]    Compiling tokio-macros v2.6.1
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking socket2 v0.6.3
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]     Checking mio v1.1.1
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[INFO] [stderr]    Compiling anyhow v1.0.102
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]     Checking anstyle v1.0.14
[INFO] [stderr]     Checking bit-vec v0.8.0
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[INFO] [stderr]     Checking anstyle-query v1.1.5
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[INFO] [stderr]     Checking futures-util v0.3.32
[INFO] [stderr]     Checking anstream v1.0.0
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking tokio v1.50.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling rustpython-parser-core v0.4.0
[INFO] [stderr]    Compiling pyo3-macros v0.26.0
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking serde v1.0.228
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[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking clap_lex v1.1.0
[INFO] [stderr]     Checking iana-time-zone v0.1.65
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]     Checking compression-core v0.4.31
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking futures-executor v0.3.32
[INFO] [stderr]    Compiling rustpython-ast v0.4.0
[INFO] [stderr]     Checking compression-codecs v0.4.37
[INFO] [stderr]     Checking chrono v0.4.44
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling clap_derive v4.6.0
[INFO] [stderr]    Compiling unic-ucd-ident v0.9.0
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
[INFO] [stderr]    Compiling numpy v0.26.0
[INFO] [stderr]     Checking winnow v1.0.3
[INFO] [stderr]    Compiling hashbrown v0.16.1
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]     Checking async-compression v0.4.41
[INFO] [stderr]     Checking quick-xml v0.38.4
[INFO] [stderr]     Checking toml_parser v1.1.2+spec-1.1.0
[INFO] [stderr]     Checking serde_json v1.0.150
[INFO] [stderr]     Checking futures v0.3.32
[INFO] [stderr]    Compiling indexmap v2.13.0
[INFO] [stderr]     Checking toml_datetime v0.7.5+spec-1.1.0
[INFO] [stderr]     Checking serde_spanned v1.1.1
[INFO] [stderr]     Checking toml_writer v1.1.1+spec-1.1.0
[INFO] [stderr]     Checking rustc-hash v2.1.2
[INFO] [stderr]     Checking winnow v0.7.15
[INFO] [stderr]     Checking protein-translate v0.2.0
[INFO] [stderr]     Checking maplit v1.0.2
[INFO] [stderr]     Checking pythonize v0.26.0
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking clap v4.6.0
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking bio v2.3.0
[INFO] [stderr]     Checking toml v0.9.12+spec-1.1.0
[INFO] [stderr]    Compiling pyo3-stub-gen-derive v0.17.2
[INFO] [stderr]     Checking pyo3-stub-gen v0.17.2
[INFO] [stderr]     Checking microBioRust v0.1.4
[INFO] [stderr]     Checking microBioRust-seqmetrics v0.1.3
[INFO] [stderr]     Checking microbiorust-py v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 52s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d", kill_on_drop: false }`
[INFO] [stdout] e6e62b9c138dcd4f5f1bc77570fa650273b678f9c27063b9867dec7e2cbcb81d
