[INFO] cloning repository https://github.com/stela2502/bam_tide
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/bam_tide" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] aeebacad897b26b2467d0d852c01789da319a933
[INFO] checking stela2502/bam_tide against d8df82673d5911b6112a85bf91d9adefb2c66a1a for pr-162242
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/bam_tide
[INFO] finished tweaking git repo https://github.com/stela2502/bam_tide
[INFO] tweaked toml for git repo https://github.com/stela2502/bam_tide written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/bam_tide on toolchain d8df82673d5911b6112a85bf91d9adefb2c66a1a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/bam_tide already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: binary `illumina_normalizer` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /workspace/builds/worker-7-tc1/source/target/.../illumina_normalizer
[INFO] [stderr]   |                                                  ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `illumina-normalizer`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/illumina_normalizer.rs
[INFO] [stderr] 1 + src/bin/illumina-normalizer.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: binary `sum_up_ont_tab_result` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /workspace/builds/worker-7-tc1/source/target/.../sum_up_ont_tab_result
[INFO] [stderr]   |                                                  ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `sum-up-ont-tab-result`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/sum_up_ont_tab_result.rs
[INFO] [stderr] 1 + src/bin/sum-up-ont-tab-result.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: `bam_tide` (manifest) generated 2 warnings
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/fast_tag_mapper`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/gtf_splice_index`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/rust-htslib.git`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/sc_primer`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/snp-index`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/scdata`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/hts-sys.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htscodecs.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded scdata v0.2.3
[INFO] [stderr]   Downloaded stela-int-to-str v0.2.3
[INFO] [stderr]   Downloaded mapping_info v0.1.0
[INFO] [stderr]   Downloaded stela-int-to-str v0.1.0
[INFO] [stderr]   Downloaded num-format v0.4.4
[INFO] [stderr]   Downloaded difflib v0.4.0
[INFO] [stderr]   Downloaded rustls-native-certs v0.6.3
[INFO] [stderr]   Downloaded predicates v3.1.4
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded termtree v0.5.1
[INFO] [stderr]   Downloaded onehot_dna v0.1.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded predicates-tree v1.0.13
[INFO] [stderr]   Downloaded ufmt-write v0.1.0
[INFO] [stderr]   Downloaded predicates-core v1.0.10
[INFO] [stderr]   Downloaded ufmt-macros v0.3.0
[INFO] [stderr]   Downloaded read-tag-table v0.1.0
[INFO] [stderr]   Downloaded index_list v0.2.17
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded libdeflater v0.13.0
[INFO] [stderr]   Downloaded byteordered v0.6.0
[INFO] [stderr]   Downloaded webpki v0.22.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded console v0.16.3
[INFO] [stderr]   Downloaded assert_cmd v2.2.1
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded indicatif v0.18.4
[INFO] [stderr]   Downloaded attohttpc v0.25.0
[INFO] [stderr]   Downloaded cc v1.2.61
[INFO] [stderr]   Downloaded ufmt v0.2.0
[INFO] [stderr]   Downloaded libdeflate-sys v0.13.0
[INFO] [stderr]   Downloaded bstr v1.12.1
[INFO] [stderr]   Downloaded libz-sys v1.1.28
[INFO] [stderr]   Downloaded bigtools v0.5.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6
[INFO] running `Command { std: "docker" "start" "315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6" "/opt/rustwide/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6" "/opt/rustwide/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: binary `illumina_normalizer` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /opt/rustwide/target/.../illumina_normalizer
[INFO] [stderr]   |                          ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `illumina-normalizer`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/illumina_normalizer.rs
[INFO] [stderr] 1 + src/bin/illumina-normalizer.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: binary `sum_up_ont_tab_result` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /opt/rustwide/target/.../sum_up_ont_tab_result
[INFO] [stderr]   |                          ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `sum-up-ont-tab-result`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/sum_up_ont_tab_result.rs
[INFO] [stderr] 1 + src/bin/sum-up-ont-tab-result.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: `bam_tide` (manifest) generated 2 warnings
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]     Checking memchr v2.8.0
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling pkg-config v0.3.33
[INFO] [stderr]     Checking itoa v1.0.18
[INFO] [stderr]     Checking writeable v0.6.3
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking litemap v0.8.2
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling autocfg v1.5.0
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]     Checking regex-syntax v0.8.10
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling icu_properties_data v2.2.0
[INFO] [stderr]    Compiling icu_normalizer_data v2.2.0
[INFO] [stderr]     Checking utf8_iter v1.0.4
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]     Checking unicode-width v0.2.2
[INFO] [stderr]     Checking simd-adler32 v0.3.9
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Checking iana-time-zone v0.1.65
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking arrayvec v0.7.6
[INFO] [stderr]    Compiling anyhow v1.0.102
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking unit-prefix v0.5.2
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking num-format v0.4.4
[INFO] [stderr]    Compiling bindgen v0.71.1
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustc-hash v2.1.2
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking futures-sink v0.3.32
[INFO] [stderr]     Checking futures-core v0.3.32
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking pin-project-lite v0.2.17
[INFO] [stderr]     Checking chrono v0.4.44
[INFO] [stderr]    Compiling zerocopy v0.8.48
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking futures-channel v0.3.32
[INFO] [stderr]    Compiling cc v1.2.61
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling rustls v0.21.12
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]     Checking stela-int-to-str v0.1.0
[INFO] [stderr]     Checking slab v0.4.12
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking console v0.16.3
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking futures-task v0.3.32
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking base64 v0.21.7
[INFO] [stderr]     Checking ryu v1.0.23
[INFO] [stderr]     Checking futures-io v0.3.32
[INFO] [stderr]     Checking rustls-pemfile v1.0.4
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking predicates-core v1.0.10
[INFO] [stderr]     Checking log v0.4.29
[INFO] [stderr]     Checking openssl-probe v0.1.6
[INFO] [stderr]     Checking http v0.2.12
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]     Checking rustls-native-certs v0.6.3
[INFO] [stderr]     Checking getrandom v0.4.2
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling assert_cmd v2.2.1
[INFO] [stderr]     Checking termtree v0.5.1
[INFO] [stderr]     Checking difflib v0.4.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking ufmt-write v0.1.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking stela-int-to-str v0.2.3
[INFO] [stderr]     Checking fastrand v2.4.1
[INFO] [stderr]     Checking predicates v3.1.4
[INFO] [stderr]     Checking predicates-tree v1.0.13
[INFO] [stderr]     Checking byteordered v0.6.0
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking tokio v1.52.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking onehot_dna v0.1.0
[INFO] [stderr]     Checking index_list v0.2.17
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling libdeflate-sys v0.13.0
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking indicatif v0.18.4
[INFO] [stderr]     Checking mapping_info v0.1.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking scdata v0.2.3
[INFO] [stderr]     Checking scdata v0.2.3 (https://github.com/stela2502/scdata#bce79c3f)
[INFO] [stderr]    Compiling ufmt-macros v0.3.0
[INFO] [stderr]     Checking ufmt v0.2.0
[INFO] [stderr]     Checking libdeflater v0.13.0
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling futures-macro v0.3.32
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking futures-util v0.3.32
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking zerofrom v0.1.7
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking rustls-webpki v0.101.7
[INFO] [stderr]     Checking sct v0.7.1
[INFO] [stderr]     Checking webpki v0.22.4
[INFO] [stderr]     Checking yoke v0.8.2
[INFO] [stderr]     Checking zerovec v0.11.6
[INFO] [stderr]     Checking zerotrie v0.2.4
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking fast_tag_mapper v0.1.0 (https://github.com/stela2502/fast_tag_mapper#209c6067)
[INFO] [stderr]     Checking tinystr v0.8.3
[INFO] [stderr]     Checking potential_utf v0.1.5
[INFO] [stderr]     Checking icu_collections v2.2.0
[INFO] [stderr]     Checking icu_locale_core v2.2.0
[INFO] [stderr]     Checking futures-executor v0.3.32
[INFO] [stderr]     Checking futures v0.3.32
[INFO] [stderr]     Checking icu_provider v2.2.0
[INFO] [stderr]     Checking icu_properties v2.2.0
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking read-tag-table v0.1.0
[INFO] [stderr]     Checking gtf_splice_index v0.4.3 (https://github.com/stela2502/gtf_splice_index#37856a4e)
[INFO] [stderr]     Checking sc_primer v0.2.0 (https://github.com/stela2502/sc_primer#1090eb02)
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]    Compiling hts-sys v2.2.0 (https://github.com/stela2502/hts-sys.git#6b607194)
[INFO] [stderr]     Checking attohttpc v0.25.0
[INFO] [stderr]     Checking bigtools v0.5.6
[INFO] [stderr]     Checking rust-htslib v1.0.0 (https://github.com/stela2502/rust-htslib.git#37251c19)
[INFO] [stderr]     Checking snp-index v0.1.3 (https://github.com/stela2502/snp-index#40d2d8a8)
[INFO] [stderr]     Checking bam_tide v1.3.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `NormalizedMolecule` and `NormalizerPartial`
[INFO] [stdout]  --> src/illumina_normalizer/normalizer.rs:4:44
[INFO] [stdout]   |
[INFO] [stdout] 4 |     FastqPairReader, NgsNormalizerSupport, NormalizedMolecule, NormalizerPartial, CHUNK_SIZE,
[INFO] [stdout]   |                                            ^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Orientation`
[INFO] [stdout]   --> src/illumina_normalizer/normalizer.rs:11:17
[INFO] [stdout]    |
[INFO] [stdout] 11 | use sc_primer::{Orientation, PrimerDetector};
[INFO] [stdout]    |                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `scdata::cell_data::GeneUmiHash`
[INFO] [stdout]  --> src/ngs_normalizer.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use scdata::cell_data::GeneUmiHash;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Grammar`
[INFO] [stdout]  --> src/primer_restore/restore.rs:4:17
[INFO] [stdout]   |
[INFO] [stdout] 4 | use sc_primer::{Grammar, PrimerDetector};
[INFO] [stdout]   |                 ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ReadTagRecord` and `ReadTagTableConfig`
[INFO] [stdout]   --> src/primer_restore/restore.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 |     ReadTagTableConfig,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 16 |     ReadTagRecord,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `NormalizedMolecule` and `NormalizerPartial`
[INFO] [stdout]  --> src/illumina_normalizer/normalizer.rs:4:44
[INFO] [stdout]   |
[INFO] [stdout] 4 |     FastqPairReader, NgsNormalizerSupport, NormalizedMolecule, NormalizerPartial, CHUNK_SIZE,
[INFO] [stdout]   |                                            ^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Orientation`
[INFO] [stdout]   --> src/illumina_normalizer/normalizer.rs:11:17
[INFO] [stdout]    |
[INFO] [stdout] 11 | use sc_primer::{Orientation, PrimerDetector};
[INFO] [stdout]    |                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `scdata::cell_data::GeneUmiHash`
[INFO] [stdout]  --> src/ngs_normalizer.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use scdata::cell_data::GeneUmiHash;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Grammar`
[INFO] [stdout]  --> src/primer_restore/restore.rs:4:17
[INFO] [stdout]   |
[INFO] [stdout] 4 | use sc_primer::{Grammar, PrimerDetector};
[INFO] [stdout]   |                 ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ReadTagRecord` and `ReadTagTableConfig`
[INFO] [stdout]   --> src/primer_restore/restore.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 |     ReadTagTableConfig,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 16 |     ReadTagRecord,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `processed_pairs` is assigned to, but never used
[INFO] [stdout]    --> src/illumina_normalizer/normalizer.rs:295:13
[INFO] [stdout]     |
[INFO] [stdout] 295 |         let mut processed_pairs = 0;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: consider using `_processed_pairs` instead
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `processed_pairs` is never read
[INFO] [stdout]    --> src/illumina_normalizer/normalizer.rs:301:17
[INFO] [stdout]     |
[INFO] [stdout] 301 |                 processed_pairs += CHUNK_SIZE;
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `processed_pairs` is assigned to, but never used
[INFO] [stdout]    --> src/illumina_normalizer/normalizer.rs:295:13
[INFO] [stdout]     |
[INFO] [stdout] 295 |         let mut processed_pairs = 0;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: consider using `_processed_pairs` instead
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `processed_pairs` is never read
[INFO] [stdout]    --> src/illumina_normalizer/normalizer.rs:301:17
[INFO] [stdout]     |
[INFO] [stdout] 301 |                 processed_pairs += CHUNK_SIZE;
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `processed_pairs` is assigned to, but never used
[INFO] [stdout]    --> src/ont_normalizer/normalizer.rs:198:13
[INFO] [stdout]     |
[INFO] [stdout] 198 |         let mut processed_pairs = 0;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: consider using `_processed_pairs` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `processed_pairs` is never read
[INFO] [stdout]    --> src/ont_normalizer/normalizer.rs:204:17
[INFO] [stdout]     |
[INFO] [stdout] 204 |                 processed_pairs += CHUNK_SIZE;
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `processed_pairs` is assigned to, but never used
[INFO] [stdout]    --> src/ont_normalizer/normalizer.rs:198:13
[INFO] [stdout]     |
[INFO] [stdout] 198 |         let mut processed_pairs = 0;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: consider using `_processed_pairs` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `processed_pairs` is never read
[INFO] [stdout]    --> src/ont_normalizer/normalizer.rs:204:17
[INFO] [stdout]     |
[INFO] [stdout] 204 |                 processed_pairs += CHUNK_SIZE;
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] warning: unused dependency `assert_cmd`
[INFO] [stderr]  --> Cargo.toml:3:1
[INFO] [stderr]   |
[INFO] [stderr] 3 | assert_cmd = "2.1.2"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `assert_cmd`
[INFO] [stderr] help: to still use for development builds, move to `dev-dependencies`
[INFO] [stderr] warning: `bam_tide` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 11s
[INFO] running `Command { std: "docker" "inspect" "315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6", kill_on_drop: false }`
[INFO] [stdout] 315e4659d4c2fd3f6482ab83eadbeb8f9b952975c099fbc3a2fb72ecf9c003b6
