[INFO] cloning repository https://github.com/lucaskbobadilla/ampliclust
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lucaskbobadilla/ampliclust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flucaskbobadilla%2Fampliclust", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flucaskbobadilla%2Fampliclust'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1fd0686da6ba55d31a14663a3657bbcdadcbd9ff
[INFO] checking lucaskbobadilla/ampliclust against d8df82673d5911b6112a85bf91d9adefb2c66a1a for pr-162242
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flucaskbobadilla%2Fampliclust" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
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[INFO] started tweaking git repo https://github.com/lucaskbobadilla/ampliclust
[INFO] finished tweaking git repo https://github.com/lucaskbobadilla/ampliclust
[INFO] tweaked toml for git repo https://github.com/lucaskbobadilla/ampliclust written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/lucaskbobadilla/ampliclust on toolchain d8df82673d5911b6112a85bf91d9adefb2c66a1a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/lucaskbobadilla/ampliclust already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded seq_io v0.3.4
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded noodles-core v0.14.0
[INFO] [stderr]   Downloaded rust-htslib v0.47.1
[INFO] [stderr]   Downloaded space v0.12.1
[INFO] [stderr]   Downloaded noodles-bam v0.60.0
[INFO] [stderr]   Downloaded linfa-clustering v0.7.1
[INFO] [stderr]   Downloaded linfa-nn v0.7.2
[INFO] [stderr]   Downloaded linfa v0.7.1
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded multimap v0.9.1
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[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded curl-sys v0.4.84+curl-8.17.0
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded openssl-src v300.5.4+3.5.4
[INFO] [stderr]   Downloaded noodles v0.70.0
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79
[INFO] running `Command { std: "docker" "start" "ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79" "/opt/rustwide/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79" "/opt/rustwide/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.31
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling zerocopy-derive v0.8.31
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking getrandom v0.2.16
[INFO] [stderr]    Compiling cc v1.2.48
[INFO] [stderr]     Checking lexical-util v0.8.5
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[INFO] [stderr]    Compiling nom v7.1.3
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[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking noodles-core v0.14.0
[INFO] [stderr]    Compiling bitflags v2.10.0
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[INFO] [stderr]     Checking icu_properties v2.1.1
[INFO] [stderr]     Checking noodles-bgzf v0.28.0
[INFO] [stderr]    Compiling linfa v0.7.1
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking noodles-csi v0.32.0
[INFO] [stderr]     Checking lexical-parse-integer v0.8.6
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[INFO] [stderr]     Checking lexical-parse-float v0.8.5
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[INFO] [stderr]    Compiling portable-atomic v1.11.1
[INFO] [stderr]     Checking clap_builder v4.5.53
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[INFO] [stderr]    Compiling openssl-src v300.5.4+3.5.4
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[INFO] [stderr]     Checking lexical-core v0.8.5
[INFO] [stderr]     Checking serde_spanned v0.6.9
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]     Checking noodles-sam v0.57.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.84+curl-8.17.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking noisy_float v0.2.0
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[INFO] [stderr]     Checking clap v4.5.53
[INFO] [stderr]     Checking noodles-bam v0.60.0
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking itertools-num v0.1.3
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[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking url v2.5.7
[INFO] [stderr]     Checking toml_edit v0.22.27
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]     Checking env_filter v0.1.4
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking noodles-fasta v0.35.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking multimap v0.9.1
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[INFO] [stderr]     Checking rand_xoshiro v0.6.0
[INFO] [stderr]     Checking crossbeam-queue v0.3.12
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking noodles-fastq v0.10.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking space v0.12.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking jiff v0.2.16
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]     Checking seq_io v0.3.4
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]     Checking toml v0.8.23
[INFO] [stderr]     Checking indicatif v0.17.11
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]     Checking noodles v0.70.0
[INFO] [stderr]     Checking crossbeam v0.8.4
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking rusty-fork v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking rand_xorshift v0.4.0
[INFO] [stderr]     Checking is-terminal v0.4.17
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]     Checking proptest v1.9.0
[INFO] [stderr]     Checking criterion v0.5.1
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking sprs v0.11.1
[INFO] [stderr]     Checking ndarray-stats v0.5.1
[INFO] [stderr]     Checking ndarray-rand v0.14.0
[INFO] [stderr]     Checking linfa-linalg v0.1.0
[INFO] [stderr]     Checking env_logger v0.11.8
[INFO] [stderr]     Checking linfa-nn v0.7.2
[INFO] [stderr]     Checking linfa-clustering v0.7.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking rust-htslib v0.47.1
[INFO] [stderr]     Checking ampliclust v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused dependency `bio`
[INFO] [stderr]  --> Cargo.toml:8:1
[INFO] [stderr]   |
[INFO] [stderr] 8 | bio = "1.6"
[INFO] [stderr]   | ^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `bio`
[INFO] [stderr] warning: unused dependency `crossbeam`
[INFO] [stderr]   --> Cargo.toml:10:1
[INFO] [stderr]    |
[INFO] [stderr] 10 | crossbeam = "0.8"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `crossbeam`
[INFO] [stderr] warning: unused dependency `indicatif`
[INFO] [stderr]   --> Cargo.toml:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | indicatif = "0.17"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `indicatif`
[INFO] [stderr] warning: unused dependency `itertools`
[INFO] [stderr]   --> Cargo.toml:14:1
[INFO] [stderr]    |
[INFO] [stderr] 14 | itertools = "0.12"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `itertools`
[INFO] [stderr] warning: unused dependency `linfa-clustering`
[INFO] [stderr]   --> Cargo.toml:17:1
[INFO] [stderr]    |
[INFO] [stderr] 17 | linfa-clustering = "0.7"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `linfa-clustering`
[INFO] [stderr] warning: unused dependency `noodles`
[INFO] [stderr]   --> Cargo.toml:39:15
[INFO] [stderr]    |
[INFO] [stderr] 39 | [dependencies.noodles]
[INFO] [stderr]    |               ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `noodles`
[INFO] [stderr] warning: unused dependency `parking_lot`
[INFO] [stderr]   --> Cargo.toml:20:1
[INFO] [stderr]    |
[INFO] [stderr] 20 | parking_lot = "0.12"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `parking_lot`
[INFO] [stderr] warning: unused dependency `seq_io`
[INFO] [stderr]   --> Cargo.toml:25:1
[INFO] [stderr]    |
[INFO] [stderr] 25 | seq_io = "0.3"
[INFO] [stderr]    | ^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `seq_io`
[INFO] [stderr] warning: unused dependency `toml`
[INFO] [stderr]   --> Cargo.toml:29:1
[INFO] [stderr]    |
[INFO] [stderr] 29 | toml = "0.8"
[INFO] [stderr]    | ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `toml`
[INFO] [stderr] warning: `ampliclust` (manifest) generated 9 warnings
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 16s
[INFO] running `Command { std: "docker" "inspect" "ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79", kill_on_drop: false }`
[INFO] [stdout] ef7ff2dbb97c5e1c2bc240d67044927a5b8cd4b0e5ed8b20ced309bba4bbdd79
