[INFO] cloning repository https://github.com/AI4S-YB/Rustpair
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/AI4S-YB/Rustpair" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2FRustpair", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2FRustpair'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] cd2682a22e963a34d60cf68aff52bab9e9a80c8c
[INFO] checking AI4S-YB/Rustpair against d8df82673d5911b6112a85bf91d9adefb2c66a1a for pr-162242
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAI4S-YB%2FRustpair" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/AI4S-YB/Rustpair
[INFO] finished tweaking git repo https://github.com/AI4S-YB/Rustpair
[INFO] tweaked toml for git repo https://github.com/AI4S-YB/Rustpair written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/AI4S-YB/Rustpair on toolchain d8df82673d5911b6112a85bf91d9adefb2c66a1a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/AI4S-YB/Rustpair already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded kdtree v0.2.1
[INFO] [stderr]   Downloaded csv-core v0.1.13
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded lz4_flex v0.11.6
[INFO] [stderr]   Downloaded openssl-sys v0.9.113
[INFO] [stderr]   Downloaded jiff-static v0.2.23
[INFO] [stderr]   Downloaded cc v1.2.60
[INFO] [stderr]   Downloaded bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]   Downloaded libc v0.2.185
[INFO] [stderr]   Downloaded jiff v0.2.23
[INFO] [stderr]   Downloaded csv v1.4.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6
[INFO] running `Command { std: "docker" "start" "6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6" "/opt/rustwide/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6" "/opt/rustwide/cargo-home/bin/cargo" "+d8df82673d5911b6112a85bf91d9adefb2c66a1a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.185
[INFO] [stderr]    Compiling find-msvc-tools v0.1.9
[INFO] [stderr]    Compiling pkg-config v0.3.33
[INFO] [stderr]     Checking litemap v0.8.2
[INFO] [stderr]     Checking writeable v0.6.3
[INFO] [stderr]    Compiling icu_normalizer_data v2.2.0
[INFO] [stderr]    Compiling icu_properties_data v2.2.0
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking regex-syntax v0.8.10
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling anyhow v1.0.102
[INFO] [stderr]     Checking bitflags v2.11.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking simd-adler32 v0.3.9
[INFO] [stderr]     Checking log v0.4.29
[INFO] [stderr]     Checking hashbrown v0.17.0
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]    Compiling cc v1.2.60
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling openssl-src v300.6.0+3.6.2
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling openssl-sys v0.9.113
[INFO] [stderr]    Compiling curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking fastrand v2.4.1
[INFO] [stderr]     Checking unsafe-libyaml v0.2.11
[INFO] [stderr]     Checking env_filter v1.0.1
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking jiff v0.2.23
[INFO] [stderr]     Checking once_cell v1.21.4
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking lz4_flex v0.11.6
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking memmap2 v0.9.10
[INFO] [stderr]     Checking kdtree v0.2.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]     Checking zerofrom v0.1.7
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]     Checking yoke v0.8.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]     Checking zerovec v0.11.6
[INFO] [stderr]     Checking zerotrie v0.2.4
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking tinystr v0.8.3
[INFO] [stderr]     Checking icu_locale_core v2.2.0
[INFO] [stderr]     Checking potential_utf v0.1.5
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]     Checking icu_collections v2.2.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]     Checking icu_provider v2.2.0
[INFO] [stderr]     Checking env_logger v0.11.10
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]     Checking icu_properties v2.2.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking serde_yaml v0.9.34+deprecated
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6", kill_on_drop: false }`
[INFO] [stdout] 6f2208effe3879c52c21404ea45821980df8a6292878101ffad62f2783f4ffb6