[INFO] fetching crate convert-af 0.4.1...
[INFO] checking convert-af-0.4.1 against 4fcf39725a9c99bd495d8c73af83628a256ff9a9 for pr-162233-crater-rollup
[INFO] extracting crate convert-af 0.4.1 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate convert-af 0.4.1
[INFO] finished tweaking crates.io crate convert-af 0.4.1
[INFO] tweaked toml for crates.io crate convert-af 0.4.1 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate convert-af 0.4.1 on toolchain 4fcf39725a9c99bd495d8c73af83628a256ff9a9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate convert-af 0.4.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]   --> Cargo.toml:38:1
[INFO] [stderr]    |
[INFO] [stderr] 38 | readme = "README.md"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:34:12
[INFO] [stderr]    |
[INFO] [stderr] 34 | homepage = "https://github.com/COMBINE-lab/af-anndata"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 39 | repository = "https://github.com/COMBINE-lab/af-anndata"
[INFO] [stderr]    |              -------------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `convert-af` (manifest) generated 2 warnings
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded af-anndata v0.5.1
[INFO] [stderr]   Downloaded value-trait v0.12.2
[INFO] [stderr]   Downloaded halfbrown v0.4.0
[INFO] [stderr]   Downloaded polars-io v0.53.0
[INFO] [stderr]   Downloaded polars-utils v0.53.0
[INFO] [stderr]   Downloaded simd-json v0.17.3
[INFO] [stderr]   Downloaded serde_stacker v0.1.14
[INFO] [stderr]   Downloaded polars-error v0.53.0
[INFO] [stderr]   Downloaded planus v1.1.1
[INFO] [stderr]   Downloaded polars-arrow-format v0.2.1
[INFO] [stderr]   Downloaded polars-schema v0.53.0
[INFO] [stderr]   Downloaded polars-time v0.53.0
[INFO] [stderr]   Downloaded polars-row v0.53.0
[INFO] [stderr]   Downloaded polars-buffer v0.53.0
[INFO] [stderr]   Downloaded polars-dtype v0.53.0
[INFO] [stderr]   Downloaded polars-ops v0.53.0
[INFO] [stderr]   Downloaded polars-compute v0.53.0
[INFO] [stderr]   Downloaded polars-json v0.53.0
[INFO] [stderr]   Downloaded polars-core v0.53.0
[INFO] [stderr]   Downloaded polars-arrow v0.53.0
[INFO] [stderr]   Downloaded polars-parquet v0.53.0
[INFO] [stderr]   Downloaded sqlparser_derive v0.4.0
[INFO] [stderr]   Downloaded polars-mem-engine v0.53.0
[INFO] [stderr]   Downloaded polars v0.53.0
[INFO] [stderr]   Downloaded polars-lazy v0.53.0
[INFO] [stderr]   Downloaded nalgebra-sparse v0.11.0
[INFO] [stderr]   Downloaded polars-sql v0.53.0
[INFO] [stderr]   Downloaded polars-expr v0.53.0
[INFO] [stderr]   Downloaded polars-stream v0.53.0
[INFO] [stderr]   Downloaded hdf5-metno-derive v0.10.2
[INFO] [stderr]   Downloaded libsw v3.5.0
[INFO] [stderr]   Downloaded libsw-core v0.3.2
[INFO] [stderr]   Downloaded winreg v0.56.0
[INFO] [stderr]   Downloaded hdf5-metno-types v0.11.0
[INFO] [stderr]   Downloaded anndata-hdf5 v0.5.3
[INFO] [stderr]   Downloaded hdf5-metno-sys v0.11.3
[INFO] [stderr]   Downloaded sqlparser v0.60.0
[INFO] [stderr]   Downloaded nalgebra v0.34.2
[INFO] [stderr]   Downloaded blosc-src v0.3.8
[INFO] [stderr]   Downloaded polars-plan v0.53.0
[INFO] [stderr]   Downloaded hdf5-metno v0.12.5
[INFO] [stderr]   Downloaded anndata v0.7.0
[INFO] [stderr]   Downloaded hdf5-metno-src v0.10.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90
[INFO] running `Command { std: "docker" "start" "a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90" "/opt/rustwide/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90" "/opt/rustwide/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]   --> Cargo.toml:38:1
[INFO] [stderr]    |
[INFO] [stderr] 38 | readme = "README.md"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:34:12
[INFO] [stderr]    |
[INFO] [stderr] 34 | homepage = "https://github.com/COMBINE-lab/af-anndata"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 39 | repository = "https://github.com/COMBINE-lab/af-anndata"
[INFO] [stderr]    |              -------------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `convert-af` (manifest) generated 2 warnings
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]    Compiling serde v1.0.229
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking futures-core v0.3.33
[INFO] [stderr]     Checking futures-sink v0.3.33
[INFO] [stderr]     Checking either v1.17.0
[INFO] [stderr]    Compiling syn v3.0.3
[INFO] [stderr]     Checking futures-io v0.3.33
[INFO] [stderr]    Compiling cc v1.4.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]    Compiling futures-macro v0.3.33
[INFO] [stderr]     Checking futures-task v0.3.33
[INFO] [stderr]    Compiling zerocopy-derive v0.8.56
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]    Compiling rustls v0.23.43
[INFO] [stderr]    Compiling ar_archive_writer v0.5.3
[INFO] [stderr]     Checking sync_wrapper v1.0.2
[INFO] [stderr]     Checking futures-channel v0.3.33
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking aho-corasick v1.1.5
[INFO] [stderr]     Checking foldhash v0.2.0
[INFO] [stderr]     Checking chacha20 v0.10.1
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]    Compiling signal-hook v0.4.4
[INFO] [stderr]     Checking array-init-cursor v0.2.1
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking simd-adler32 v0.3.10
[INFO] [stderr]     Checking planus v1.1.1
[INFO] [stderr]     Checking humantime v2.4.0
[INFO] [stderr]     Checking rand v0.10.2
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking rmp v0.8.15
[INFO] [stderr]     Checking futures-util v0.3.33
[INFO] [stderr]     Checking castaway v0.2.4
[INFO] [stderr]    Compiling polars-utils v0.53.0
[INFO] [stderr]     Checking zlib-rs v0.6.7
[INFO] [stderr]     Checking phf_shared v0.12.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling num-derive v0.4.2
[INFO] [stderr]    Compiling polars-buffer v0.53.0
[INFO] [stderr]    Compiling polars-schema v0.53.0
[INFO] [stderr]     Checking zerovec v0.11.6
[INFO] [stderr]    Compiling chrono-tz v0.10.4
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]     Checking phf v0.12.1
[INFO] [stderr]    Compiling polars-arrow v0.53.0
[INFO] [stderr]     Checking debug_unsafe v0.1.4
[INFO] [stderr]     Checking atoi_simd v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.27.2
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]     Checking ethnum v1.5.3
[INFO] [stderr]     Checking streaming-iterator v0.1.9
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking potential_utf v0.1.5
[INFO] [stderr]    Compiling polars-compute v0.53.0
[INFO] [stderr]     Checking strength_reduce v0.2.4
[INFO] [stderr]     Checking fast-float2 v0.2.3
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]     Checking boxcar v0.2.14
[INFO] [stderr]    Compiling polars-core v0.53.0
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]     Checking zerocopy v0.8.56
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling psm v0.1.32
[INFO] [stderr]    Compiling stacker v0.1.25
[INFO] [stderr]    Compiling lz4-sys v1.11.1+lz4-1.10.0
[INFO] [stderr]    Compiling ref-cast v1.0.26
[INFO] [stderr]     Checking float-cmp v0.10.0
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]    Compiling polars-ops v0.53.0
[INFO] [stderr]     Checking xxhash-rust v0.8.18
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling blake3 v1.8.6
[INFO] [stderr]    Compiling async-stream-impl v0.3.6
[INFO] [stderr]    Compiling block-buffer v0.10.4
[INFO] [stderr]    Compiling crypto-common v0.1.7
[INFO] [stderr]     Checking streaming-decompression v0.1.2
[INFO] [stderr]    Compiling digest v0.10.7
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]     Checking async-stream v0.3.6
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling recursive-proc-macro-impl v0.1.1
[INFO] [stderr]     Checking bitflags v2.13.1
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking serde_json v1.0.151
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]     Checking serde_stacker v0.1.14
[INFO] [stderr]     Checking uuid v1.24.0
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling polars-plan v0.53.0
[INFO] [stderr]    Compiling hdf5-metno-src v0.10.2
[INFO] [stderr]     Checking glob v0.3.4
[INFO] [stderr]     Checking recursive v0.1.1
[INFO] [stderr]    Compiling polars-expr v0.53.0
[INFO] [stderr]    Compiling pest v2.8.8
[INFO] [stderr]     Checking num-bigint v0.4.8
[INFO] [stderr]    Compiling polars-stream v0.53.0
[INFO] [stderr]     Checking futures-executor v0.3.33
[INFO] [stderr]     Checking async-channel v2.5.0
[INFO] [stderr]    Compiling blosc-src v0.3.8
[INFO] [stderr]     Checking futures v0.3.33
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking crossbeam-queue v0.3.13
[INFO] [stderr]     Checking crossbeam-channel v0.5.16
[INFO] [stderr]    Compiling polars-lazy v0.53.0
[INFO] [stderr]    Compiling nalgebra-macros v0.3.0
[INFO] [stderr]    Compiling polars v0.53.0
[INFO] [stderr]     Checking regex v1.13.1
[INFO] [stderr]    Compiling hdf5-metno-types v0.11.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-iter v0.1.46
[INFO] [stderr]    Compiling hdf5-metno v0.12.5
[INFO] [stderr]     Checking ascii v1.1.0
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking permutation v0.4.1
[INFO] [stderr]     Checking libsw-core v0.3.2
[INFO] [stderr]     Checking matchers v0.2.0
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]    Compiling pest_meta v2.8.8
[INFO] [stderr]     Checking libsw v3.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling displaydoc v0.2.7
[INFO] [stderr]    Compiling tokio-macros v2.7.2
[INFO] [stderr]    Compiling bytemuck_derive v1.12.0
[INFO] [stderr]    Compiling async-trait v0.1.92
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]     Checking crossterm v0.29.0
[INFO] [stderr]     Checking comfy-table v7.2.2
[INFO] [stderr]    Compiling ref-cast-impl v1.0.26
[INFO] [stderr]     Checking tinystr v0.8.3
[INFO] [stderr]     Checking zerotrie v0.2.4
[INFO] [stderr]     Checking icu_collections v2.2.0
[INFO] [stderr]     Checking icu_locale_core v2.2.0
[INFO] [stderr]     Checking fs4 v0.13.1
[INFO] [stderr]     Checking polars-parquet-format v0.1.0
[INFO] [stderr]    Compiling pest_generator v2.8.8
[INFO] [stderr]    Compiling hdf5-metno-derive v0.10.2
[INFO] [stderr]     Checking terminal_size v0.4.4
[INFO] [stderr]     Checking clap_builder v4.6.6
[INFO] [stderr]     Checking thiserror v2.0.20
[INFO] [stderr]    Compiling clap_derive v4.6.4
[INFO] [stderr]     Checking icu_provider v2.2.0
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]     Checking tracing-subscriber v0.3.23
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking rustls-webpki v0.103.13
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]     Checking icu_properties v2.2.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling hdf5-metno-sys v0.11.3
[INFO] [stderr]    Compiling pest_derive v2.8.8
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.9.5
[INFO] [stderr]     Checking bytes v1.12.1
[INFO] [stderr]     Checking idna_adapter v1.2.2
[INFO] [stderr]     Checking chrono v0.4.41
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking serde_urlencoded v0.7.1
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking tokio v1.53.1
[INFO] [stderr]     Checking http v1.5.0
[INFO] [stderr]     Checking quick-xml v0.39.4
[INFO] [stderr]     Checking polars-arrow-format v0.2.1
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking bincode v2.0.1
[INFO] [stderr]     Checking compact_str v0.9.1
[INFO] [stderr]     Checking rmp-serde v1.3.1
[INFO] [stderr]     Checking rand_distr v0.5.1
[INFO] [stderr]     Checking argminmax v0.6.3
[INFO] [stderr]     Checking halfbrown v0.4.0
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking clap v4.6.6
[INFO] [stderr]     Checking http-body v1.1.0
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking http-body-util v0.1.4
[INFO] [stderr]     Checking value-trait v0.12.2
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking now v0.1.3
[INFO] [stderr]     Checking simd-json v0.17.3
[INFO] [stderr]     Checking nalgebra v0.34.2
[INFO] [stderr]     Checking tokio-util v0.7.19
[INFO] [stderr]     Checking tower v0.5.3
[INFO] [stderr]     Checking tokio-rustls v0.26.4
[INFO] [stderr]     Checking h2 v0.4.15
[INFO] [stderr]     Checking tower-http v0.6.11
[INFO] [stderr]     Checking hyper v1.11.0
[INFO] [stderr]     Checking hyper-util v0.1.20
[INFO] [stderr]     Checking lz4 v1.28.1
[INFO] [stderr]     Checking hyper-rustls v0.27.9
[INFO] [stderr]     Checking reqwest v0.12.28
[INFO] [stderr]     Checking object_store v0.13.2
[INFO] [stderr]     Checking nalgebra-sparse v0.11.0
[INFO] [stderr]     Checking polars-error v0.53.0
[INFO] [stderr]     Checking polars-dtype v0.53.0
[INFO] [stderr]     Checking polars-row v0.53.0
[INFO] [stderr]     Checking polars-parquet v0.53.0
[INFO] [stderr]     Checking polars-json v0.53.0
[INFO] [stderr]     Checking polars-time v0.53.0
[INFO] [stderr]     Checking polars-io v0.53.0
[INFO] [stderr]     Checking polars-mem-engine v0.53.0
[INFO] [stderr]     Checking anndata v0.7.0
[INFO] [stderr]     Checking anndata-hdf5 v0.5.3
[INFO] [stderr]     Checking af-anndata v0.5.1
[INFO] [stderr]     Checking convert-af v0.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 55s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: polars-arrow v0.53.0, polars-core v0.53.0, polars-plan v0.53.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90", kill_on_drop: false }`
[INFO] [stdout] a97b819861a2cb05a117a5405582fed927a6ee6fab58beb34a1c9bcca45d7b90
