[INFO] cloning repository https://github.com/fulcrumgenomics/fgumi
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fulcrumgenomics/fgumi" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 247404b7ca4ff508de550d9b246073a4d170792d
[INFO] checking fulcrumgenomics/fgumi against 4fcf39725a9c99bd495d8c73af83628a256ff9a9 for pr-162233-crater-rollup
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-1-tc1/source/.cargo/config.toml
[INFO] removed /workspace/builds/worker-1-tc1/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/fulcrumgenomics/fgumi
[INFO] finished tweaking git repo https://github.com/fulcrumgenomics/fgumi
[INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/fgumi written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/fulcrumgenomics/fgumi on toolchain 4fcf39725a9c99bd495d8c73af83628a256ff9a9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/fulcrumgenomics/fgumi already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `fgumi-cli-common`
[INFO] [stderr]    --> Cargo.toml:320:25
[INFO] [stderr]     |
[INFO] [stderr] 320 | [workspace.dependencies.fgumi-cli-common]
[INFO] [stderr]     |                         ^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `fgumi-cli-common`
[INFO] [stderr] warning: workspace (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/fgumi-sort/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `fgumi-sort` (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]    --> Cargo.toml:233:1
[INFO] [stderr]     |
[INFO] [stderr] 233 | readme = "README.md"
[INFO] [stderr]     | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:230:12
[INFO] [stderr]     |
[INFO] [stderr] 230 | homepage = "https://github.com/fulcrumgenomics/fgumi"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 241 | [package.repository]
[INFO] [stderr]     | --------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `fgumi` (manifest) generated 2 warnings
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/fgumi-bam-io/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `fgumi-bam-io` (manifest) generated 1 warning
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded libdeflater v1.26.0
[INFO] [stderr]   Downloaded read-structure v0.2.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.51.0
[INFO] [stderr]   Downloaded noodles-core v0.20.0
[INFO] [stderr]   Downloaded mimalloc v0.1.52
[INFO] [stderr]   Downloaded rstest_macros v0.26.1
[INFO] [stderr]   Downloaded target-triple v1.0.1
[INFO] [stderr]   Downloaded lru v0.18.2
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded noodles-fasta v0.66.0
[INFO] [stderr]   Downloaded noodles-tabix v0.66.0
[INFO] [stderr]   Downloaded bit-vec v0.10.1
[INFO] [stderr]   Downloaded serde-aux v4.7.0
[INFO] [stderr]   Downloaded bytesize v2.7.0
[INFO] [stderr]   Downloaded noodles v0.115.0
[INFO] [stderr]   Downloaded trybuild v1.0.118
[INFO] [stderr]   Downloaded fgoxide v0.6.0
[INFO] [stderr]   Downloaded rstest v0.26.1
[INFO] [stderr]   Downloaded seq_io v0.3.4
[INFO] [stderr]   Downloaded noodles-csi v0.60.0
[INFO] [stderr]   Downloaded bgzf v0.5.0
[INFO] [stderr]   Downloaded noodles-bam v0.94.0
[INFO] [stderr]   Downloaded noodles-vcf v0.92.0
[INFO] [stderr]   Downloaded noodles-sam v0.89.0
[INFO] [stderr]   Downloaded wide v1.6.1
[INFO] [stderr]   Downloaded libdeflate-sys v1.26.0
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.49
[INFO] [stderr]   Downloaded libgit2-sys v0.18.8+1.9.7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3
[INFO] running `Command { std: "docker" "start" "4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3" "/opt/rustwide/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3" "/opt/rustwide/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `fgumi-cli-common`
[INFO] [stderr]    --> Cargo.toml:320:25
[INFO] [stderr]     |
[INFO] [stderr] 320 | [workspace.dependencies.fgumi-cli-common]
[INFO] [stderr]     |                         ^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `fgumi-cli-common`
[INFO] [stderr] warning: workspace (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/fgumi-bam-io/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `fgumi-bam-io` (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/fgumi-sort/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `fgumi-sort` (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]    --> Cargo.toml:233:1
[INFO] [stderr]     |
[INFO] [stderr] 233 | readme = "README.md"
[INFO] [stderr]     | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:230:12
[INFO] [stderr]     |
[INFO] [stderr] 230 | homepage = "https://github.com/fulcrumgenomics/fgumi"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 241 | [package.repository]
[INFO] [stderr]     | --------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `fgumi` (manifest) generated 2 warnings
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]     Checking either v1.18.0
[INFO] [stderr]     Checking aho-corasick v1.1.5
[INFO] [stderr]    Compiling syn v3.0.4
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]     Checking zlib-rs v0.6.7
[INFO] [stderr]     Checking crossbeam-channel v0.5.16
[INFO] [stderr]     Checking hashbrown v0.17.1
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]     Checking bit-vec v0.10.1
[INFO] [stderr]     Checking serde_json v1.0.151
[INFO] [stderr]     Checking clap_builder v4.6.6
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]    Compiling memchr v2.8.3
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]    Compiling toml_parser v1.1.3+spec-1.1.0
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling rstest_macros v0.26.1
[INFO] [stderr]    Compiling relative-path v1.9.3
[INFO] [stderr]     Checking futures-core v0.3.34
[INFO] [stderr]     Checking futures-timer v3.0.4
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]    Compiling nix v0.31.3
[INFO] [stderr]    Compiling cc v1.4.4
[INFO] [stderr]     Checking smallvec v1.15.2
[INFO] [stderr]     Checking crossbeam-queue v0.3.13
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking bytesize v2.7.0
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling log v0.4.34
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking getrandom v0.4.3
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking page_size v0.6.0
[INFO] [stderr]     Checking criterion-plot v0.8.2
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking rand_xorshift v0.4.0
[INFO] [stderr]     Checking rand v0.9.5
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking voracious_radix_sort v1.2.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking num-integer v0.1.47
[INFO] [stderr]     Checking sysinfo v0.38.4
[INFO] [stderr]     Checking jiff-core v0.1.0
[INFO] [stderr]     Checking rand v0.10.2
[INFO] [stderr]     Checking fgumi-simd-fastq v0.7.0 (/opt/rustwide/workdir/crates/fgumi-simd-fastq)
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking which v8.0.5
[INFO] [stderr]    Compiling toml_datetime v1.1.1+spec-1.1.0
[INFO] [stderr]    Compiling toml_edit v0.25.13+spec-1.1.0
[INFO] [stderr]     Checking lru v0.18.2
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking serde_spanned v1.1.1
[INFO] [stderr]     Checking toml_writer v1.1.2+spec-1.1.0
[INFO] [stderr]    Compiling target-triple v1.0.1
[INFO] [stderr]     Checking glob v0.3.4
[INFO] [stderr]     Checking arrayvec v0.7.8
[INFO] [stderr]     Checking rand_distr v0.6.0
[INFO] [stderr]    Compiling libdeflate-sys v1.26.0
[INFO] [stderr]    Compiling alloca v0.4.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.49
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling libgit2-sys v0.18.8+1.9.7
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]    Compiling proc-macro-crate v3.5.0
[INFO] [stderr]     Checking fs4 v1.1.0
[INFO] [stderr]     Checking rusty-fork v0.3.1
[INFO] [stderr]     Checking bstr v1.13.1
[INFO] [stderr]     Checking regex v1.13.1
[INFO] [stderr]     Checking jiff v0.2.35
[INFO] [stderr]     Checking toml v1.1.4+spec-1.1.0
[INFO] [stderr]     Checking num-format v0.4.4
[INFO] [stderr]     Checking noodles-core v0.20.0
[INFO] [stderr]     Checking winnow v1.0.4
[INFO] [stderr]     Checking env_filter v2.0.0
[INFO] [stderr]    Compiling serde v1.0.229
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking fgumi-fmt v0.7.0 (/opt/rustwide/workdir/crates/fgumi-fmt)
[INFO] [stderr]     Checking mimalloc v0.1.52
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling clap_derive v4.6.4
[INFO] [stderr]    Compiling bytemuck_derive v1.12.0
[INFO] [stderr]    Compiling futures-macro v0.3.34
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling zerocopy-derive v0.8.56
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]     Checking thiserror v2.0.20
[INFO] [stderr]    Compiling fgumi-cli-macros v0.7.0 (/opt/rustwide/workdir/crates/fgumi-cli-macros)
[INFO] [stderr]     Checking futures-util v0.3.34
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]    Compiling enum_dispatch v0.3.13
[INFO] [stderr]     Checking safe_arch v1.2.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking wide v1.6.1
[INFO] [stderr]     Checking zerocopy v0.8.56
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking clap v4.6.6
[INFO] [stderr]     Checking env_logger v0.11.11
[INFO] [stderr]    Compiling strum_macros v0.28.0
[INFO] [stderr]     Checking libdeflater v1.26.0
[INFO] [stderr]     Checking noodles-bgzf v0.51.0
[INFO] [stderr]     Checking fgumi-cli-common v0.7.0 (/opt/rustwide/workdir/crates/fgumi-cli-common)
[INFO] [stderr]     Checking noodles-csi v0.60.0
[INFO] [stderr]     Checking noodles-fasta v0.66.0
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bgzf v0.5.0
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking noodles-tabix v0.66.0
[INFO] [stderr]     Checking noodles-sam v0.89.0
[INFO] [stderr]     Checking fgumi-bgzf v0.7.0 (/opt/rustwide/workdir/crates/fgumi-bgzf)
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking serde-value v0.7.0
[INFO] [stderr]     Checking trybuild v1.0.118
[INFO] [stderr]     Checking seq_io v0.3.4
[INFO] [stderr]     Checking noodles-vcf v0.92.0
[INFO] [stderr]     Checking serde-aux v4.7.0
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking read-structure v0.2.0
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking strum v0.28.0
[INFO] [stderr]     Checking fgoxide v0.6.0
[INFO] [stderr]     Checking noodles-bam v0.94.0
[INFO] [stderr]     Checking rstest v0.26.1
[INFO] [stderr]     Checking noodles v0.115.0
[INFO] [stderr]     Checking fgumi-tag v0.7.0 (/opt/rustwide/workdir/crates/fgumi-tag)
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]     Checking fgumi-dna v0.7.0 (/opt/rustwide/workdir/crates/fgumi-dna)
[INFO] [stderr]     Checking fgumi-pipeline-core v0.7.0 (/opt/rustwide/workdir/crates/fgumi-pipeline-core)
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking fgumi-raw-bam v0.7.0 (/opt/rustwide/workdir/crates/fgumi-raw-bam)
[INFO] [stderr]     Checking fgumi-umi v0.7.0 (/opt/rustwide/workdir/crates/fgumi-umi)
[INFO] [stderr]     Checking proptest v1.11.0
[INFO] [stderr]     Checking rand v0.8.7
[INFO] [stderr]    Compiling git2 v0.21.0
[INFO] [stderr]     Checking criterion v0.8.2
[INFO] [stderr]     Checking fgumi-bam-io v0.7.0 (/opt/rustwide/workdir/crates/fgumi-bam-io)
[INFO] [stderr]     Checking fgumi-sam v0.7.0 (/opt/rustwide/workdir/crates/fgumi-sam)
[INFO] [stderr]     Checking fgumi-metrics v0.7.0 (/opt/rustwide/workdir/crates/fgumi-metrics)
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]     Checking fgumi-sort v0.7.0 (/opt/rustwide/workdir/crates/fgumi-sort)
[INFO] [stderr]     Checking fgumi-consensus v0.7.0 (/opt/rustwide/workdir/crates/fgumi-consensus)
[INFO] [stdout] warning: Use of ambiguously glob imported trait `Strategy`
[INFO] [stdout]     --> crates/fgumi-umi/src/assigner.rs:4107:24
[INFO] [stdout]      |
[INFO] [stdout] 4103 |     use proptest::strategy::Strategy as PropStrategy;
[INFO] [stdout]      |         ---------------------------- `Strategy` imported ambiguously here
[INFO] [stdout] ...
[INFO] [stdout] 4107 |         "[ACGT]{4,12}".prop_map(|s| s.clone())
[INFO] [stdout]      |                        ^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: Import `Strategy` explicitly
[INFO] [stdout]      = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]      = note: for more information, see issue #152822 <https://github.com/rust-lang/rust/issues/152822>
[INFO] [stdout]      = note: `#[warn(ambiguous_glob_imported_traits)]` (part of `#[warn(future_incompatible)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: Use of ambiguously glob imported trait `Strategy`
[INFO] [stdout]     --> crates/fgumi-umi/src/assigner.rs:4112:40
[INFO] [stdout]      |
[INFO] [stdout] 4103 |     use proptest::strategy::Strategy as PropStrategy;
[INFO] [stdout]      |         ---------------------------- `Strategy` imported ambiguously here
[INFO] [stdout] ...
[INFO] [stdout] 4112 |         ("[ACGT]{4,8}", "[ACGT]{4,8}").prop_map(|(a, b)| format!("{a}-{b}"))
[INFO] [stdout]      |                                        ^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: Import `Strategy` explicitly
[INFO] [stdout]      = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]      = note: for more information, see issue #152822 <https://github.com/rust-lang/rust/issues/152822>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking fgumi-pipeline-io v0.7.0 (/opt/rustwide/workdir/crates/fgumi-pipeline-io)
[INFO] [stderr]    Compiling built v0.8.1
[INFO] [stderr]    Compiling fgumi v0.7.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/commands/dedup.rs:1596:22
[INFO] [stdout]      |
[INFO] [stdout] 1596 |                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |                      ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1596 -                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout] 1596 +                     .try_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> src/lib/unified_pipeline/base.rs:737:10
[INFO] [stdout]     |
[INFO] [stdout] 737 |         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |          ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 737 -         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 737 +         .try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> src/lib/unified_pipeline/base.rs:997:33
[INFO] [stdout]     |
[INFO] [stdout] 997 |         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |                                 ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 997 -         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 997 +         let _ = self.heap_bytes.try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking xtask v0.7.0 (/opt/rustwide/workdir/crates/xtask)
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/commands/dedup.rs:1596:22
[INFO] [stdout]      |
[INFO] [stdout] 1596 |                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |                      ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1596 -                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout] 1596 +                     .try_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> src/lib/unified_pipeline/base.rs:737:10
[INFO] [stdout]     |
[INFO] [stdout] 737 |         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |          ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 737 -         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 737 +         .try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> src/lib/unified_pipeline/base.rs:997:33
[INFO] [stdout]     |
[INFO] [stdout] 997 |         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |                                 ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 997 -         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 997 +         let _ = self.heap_bytes.try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<usize>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/unified_pipeline/base.rs:6837:37
[INFO] [stdout]      |
[INFO] [stdout] 6837 |                 self.q6_push_budget.fetch_update(Ordering::SeqCst, Ordering::SeqCst, |x| {
[INFO] [stdout]      |                                     ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 6837 -                 self.q6_push_budget.fetch_update(Ordering::SeqCst, Ordering::SeqCst, |x| {
[INFO] [stdout] 6837 +                 self.q6_push_budget.try_update(Ordering::SeqCst, Ordering::SeqCst, |x| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] warning: unused dependency `itertools`
[INFO] [stderr]   --> Cargo.toml:43:1
[INFO] [stderr]    |
[INFO] [stderr] 43 | itertools = "0.14.0"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `itertools`
[INFO] [stderr] warning: `fgumi` (manifest) generated 1 warning
[INFO] [stderr] warning: unused dependency `parking_lot`
[INFO] [stderr]   --> crates/fgumi-sort/Cargo.toml:35:1
[INFO] [stderr]    |
[INFO] [stderr] 35 | parking_lot = { workspace = true }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `parking_lot`
[INFO] [stderr] warning: `fgumi-sort` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 35s
[INFO] running `Command { std: "docker" "inspect" "4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3", kill_on_drop: false }`
[INFO] [stdout] 4add7dff6fe02a0030fa127eee0eb9256812c8ea77ee2325f690a90718b7d7b3
