[INFO] cloning repository https://github.com/broadinstitute/gnomad-lr
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/broadinstitute/gnomad-lr" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4d38525fba925b0956b94e484bc03a600a75c5d1
[INFO] checking broadinstitute/gnomad-lr against 4fcf39725a9c99bd495d8c73af83628a256ff9a9 for pr-162233-crater-rollup
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbroadinstitute%2Fgnomad-lr" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-7-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/broadinstitute/gnomad-lr
[INFO] finished tweaking git repo https://github.com/broadinstitute/gnomad-lr
[INFO] tweaked toml for git repo https://github.com/broadinstitute/gnomad-lr written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/broadinstitute/gnomad-lr on toolchain 4fcf39725a9c99bd495d8c73af83628a256ff9a9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/broadinstitute/gnomad-lr already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/broadinstitute/genohype.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles v0.91.0
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6
[INFO] running `Command { std: "docker" "start" "92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6" "/opt/rustwide/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6" "/opt/rustwide/cargo-home/bin/cargo" "+4fcf39725a9c99bd495d8c73af83628a256ff9a9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
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[INFO] [stderr]     Checking genohype-pool v0.1.0 (https://github.com/broadinstitute/genohype.git?rev=39b2f2a99f191acb49cf18d9a96a26fb62cd29d4#39b2f2a9)
[INFO] [stderr]     Checking genohype-core v0.1.0 (https://github.com/broadinstitute/genohype.git?rev=39b2f2a99f191acb49cf18d9a96a26fb62cd29d4#39b2f2a9)
[INFO] [stderr]     Checking gnomad-lr v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 46s
[INFO] running `Command { std: "docker" "inspect" "92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6", kill_on_drop: false }`
[INFO] [stdout] 92d420104583c4d2f59020311d82a952bb511b7227ac9f84a4d8a843e1abc8c6
