[INFO] cloning repository https://github.com/kamimrcht/salmon-unitigs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/kamimrcht/salmon-unitigs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkamimrcht%2Fsalmon-unitigs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkamimrcht%2Fsalmon-unitigs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 832da5180cd745ae6bb50cd0c75bcfda34c7c1a1
[INFO] checking kamimrcht/salmon-unitigs against 79c0559184f27f4433a6fbc260b950d06d4a4889 for pr-162233-crater-rollup
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkamimrcht%2Fsalmon-unitigs" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/kamimrcht/salmon-unitigs
[INFO] finished tweaking git repo https://github.com/kamimrcht/salmon-unitigs
[INFO] tweaked toml for git repo https://github.com/kamimrcht/salmon-unitigs written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/kamimrcht/salmon-unitigs on toolchain 79c0559184f27f4433a6fbc260b950d06d4a4889
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+79c0559184f27f4433a6fbc260b950d06d4a4889" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/kamimrcht/salmon-unitigs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+79c0559184f27f4433a6fbc260b950d06d4a4889" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `crossbeam`
[INFO] [stderr]   --> Cargo.toml:27:1
[INFO] [stderr]    |
[INFO] [stderr] 27 | crossbeam = "0.8"
[INFO] [stderr]    | ^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `crossbeam`
[INFO] [stderr] warning: unused workspace dependency `nalgebra`
[INFO] [stderr]   --> Cargo.toml:31:1
[INFO] [stderr]    |
[INFO] [stderr] 31 | nalgebra = "0.33"
[INFO] [stderr]    | ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `nalgebra`
[INFO] [stderr] warning: unused workspace dependency `ndarray`
[INFO] [stderr]   --> Cargo.toml:32:1
[INFO] [stderr]    |
[INFO] [stderr] 32 | ndarray = "0.16"
[INFO] [stderr]    | ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `ndarray`
[INFO] [stderr] warning: unused workspace dependency `sha2`
[INFO] [stderr]   --> Cargo.toml:40:1
[INFO] [stderr]    |
[INFO] [stderr] 40 | sha2 = "0.10"
[INFO] [stderr]    | ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `sha2`
[INFO] [stderr] warning: unused workspace dependency `zstd`
[INFO] [stderr]   --> Cargo.toml:45:1
[INFO] [stderr]    |
[INFO] [stderr] 45 | zstd = "0.13"
[INFO] [stderr]    | ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `zstd`
[INFO] [stderr] warning: workspace (manifest) generated 5 warnings
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156
[INFO] running `Command { std: "docker" "start" "f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156" "/opt/rustwide/cargo-home/bin/cargo" "+79c0559184f27f4433a6fbc260b950d06d4a4889" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156" "/opt/rustwide/cargo-home/bin/cargo" "+79c0559184f27f4433a6fbc260b950d06d4a4889" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `crossbeam`
[INFO] [stderr]   --> Cargo.toml:27:1
[INFO] [stderr]    |
[INFO] [stderr] 27 | crossbeam = "0.8"
[INFO] [stderr]    | ^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `crossbeam`
[INFO] [stderr] warning: unused workspace dependency `nalgebra`
[INFO] [stderr]   --> Cargo.toml:31:1
[INFO] [stderr]    |
[INFO] [stderr] 31 | nalgebra = "0.33"
[INFO] [stderr]    | ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `nalgebra`
[INFO] [stderr] warning: unused workspace dependency `ndarray`
[INFO] [stderr]   --> Cargo.toml:32:1
[INFO] [stderr]    |
[INFO] [stderr] 32 | ndarray = "0.16"
[INFO] [stderr]    | ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `ndarray`
[INFO] [stderr] warning: unused workspace dependency `sha2`
[INFO] [stderr]   --> Cargo.toml:40:1
[INFO] [stderr]    |
[INFO] [stderr] 40 | sha2 = "0.10"
[INFO] [stderr]    | ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `sha2`
[INFO] [stderr] warning: unused workspace dependency `zstd`
[INFO] [stderr]   --> Cargo.toml:45:1
[INFO] [stderr]    |
[INFO] [stderr] 45 | zstd = "0.13"
[INFO] [stderr]    | ^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the workspace dependency `zstd`
[INFO] [stderr] warning: workspace (manifest) generated 5 warnings
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling shlex v2.0.1
[INFO] [stderr]    Compiling find-msvc-tools v0.1.9
[INFO] [stderr]     Checking memchr v2.8.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling zerocopy v0.8.52
[INFO] [stderr]    Compiling pkg-config v0.3.33
[INFO] [stderr]     Checking either v1.16.0
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[INFO] [stderr]    Compiling num-traits v0.2.19
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[INFO] [stderr]     Checking smallvec v1.15.1
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[INFO] [stderr]     Checking lambert_w v1.2.34
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
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[INFO] [stderr]     Checking crossbeam-queue v0.3.12
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[INFO] [stderr]     Checking lexical-util v1.0.7
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[INFO] [stderr]     Checking liblzma v0.3.6
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]    Compiling object v0.37.3
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[INFO] [stderr]    Compiling derivative v2.2.0
[INFO] [stderr]    Compiling paste v1.0.15
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[INFO] [stderr]    Compiling ksw2rs v0.2.0
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[INFO] [stderr]     Checking noodles-core v0.20.0
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[INFO] [stderr]     Checking noodles-csi v0.56.0
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[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking binout v0.3.1
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[INFO] [stderr]     Checking rand_core v0.9.5
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[INFO] [stderr]    Compiling portable-atomic v1.13.1
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[INFO] [stderr]     Checking regex v1.12.4
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[INFO] [stderr]     Checking num-iter v0.1.45
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[INFO] [stderr]    Compiling epserde-derive v0.12.5
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[INFO] [stderr]     Checking bytemuck v1.25.0
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[INFO] [stderr]     Checking sysctl v0.6.0
[INFO] [stderr]     Checking value-traits v0.2.1
[INFO] [stderr]    Compiling ambassador v0.5.1
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[INFO] [stderr]     Checking needletail v0.6.3
[INFO] [stderr]     Checking niffler v3.0.0
[INFO] [stderr]     Checking salmon-eqclass v2.3.4 (/opt/rustwide/workdir/crates/salmon-eqclass)
[INFO] [stderr]     Checking paraseq v0.4.13
[INFO] [stderr]     Checking bon v3.9.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking sux v0.14.0
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking libradicl v0.14.2
[INFO] [stderr]     Checking bramble-rs v0.1.5
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking rand v0.9.4
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]     Checking packed-seq v4.4.2
[INFO] [stderr]     Checking criterion v0.5.1
[INFO] [stderr]     Checking seq-hash v0.1.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking simd-minimizers v2.3.1
[INFO] [stderr]     Checking salmon-rad v2.3.4 (/opt/rustwide/workdir/crates/salmon-rad)
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]     Checking cf1-rs v0.5.0
[INFO] [stderr]     Checking seq_geom_parser v1.1.0
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking salmon-infer v2.3.4 (/opt/rustwide/workdir/crates/salmon-infer)
[INFO] [stderr]     Checking sshash-lib v0.6.1
[INFO] [stderr]     Checking salmon-model v2.3.4 (/opt/rustwide/workdir/crates/salmon-model)
[INFO] [stderr]     Checking salmon-align v2.3.4 (/opt/rustwide/workdir/crates/salmon-align)
[INFO] [stderr]     Checking tiny-dict v0.6.0
[INFO] [stderr]     Checking piscem-rs v0.6.4
[INFO] [stderr]     Checking salmon-index v2.3.4 (/opt/rustwide/workdir/crates/salmon-index)
[INFO] [stderr]     Checking salmon-map v2.3.4 (/opt/rustwide/workdir/crates/salmon-map)
[INFO] [stderr]     Checking salmon-quant v2.3.4 (/opt/rustwide/workdir/crates/salmon-quant)
[INFO] [stderr]     Checking salmon-cli v2.3.4 (/opt/rustwide/workdir/crates/salmon-cli)
[INFO] [stderr] warning: unused dependency `scc`
[INFO] [stderr]   --> crates/salmon-eqclass/Cargo.toml:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | scc = { workspace = true }
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `scc`
[INFO] [stderr] warning: `salmon-eqclass` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 56s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nix v0.30.1, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156", kill_on_drop: false }`
[INFO] [stdout] f0d95e2cd99e66b49165ed3bf76fbc5b6cd55fc7a7e960a44d4cef0e4df1e156
