[INFO] cloning repository https://github.com/COMBINE-lab/compress
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/compress" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fcompress", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fcompress'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ffed7644b719273a14cc614845b302b1e7b4b5af
[INFO] checking COMBINE-lab/compress against 79c0559184f27f4433a6fbc260b950d06d4a4889 for pr-162233-crater-rollup
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fcompress" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/COMBINE-lab/compress
[INFO] finished tweaking git repo https://github.com/COMBINE-lab/compress
[INFO] tweaked toml for git repo https://github.com/COMBINE-lab/compress written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/COMBINE-lab/compress on toolchain 79c0559184f27f4433a6fbc260b950d06d4a4889
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+79c0559184f27f4433a6fbc260b950d06d4a4889" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/COMBINE-lab/compress already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+79c0559184f27f4433a6fbc260b950d06d4a4889" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: binary `summarize_p_l0_adj` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /workspace/builds/worker-2-tc2/source/target/.../summarize_p_l0_adj
[INFO] [stderr]   |                                                  ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `summarize-p-l0-adj`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/summarize_p_l0_adj.rs
[INFO] [stderr] 1 + src/bin/summarize-p-l0-adj.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: `quadtree` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f
[INFO] running `Command { std: "docker" "start" "71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f" "/opt/rustwide/cargo-home/bin/cargo" "+79c0559184f27f4433a6fbc260b950d06d4a4889" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f" "/opt/rustwide/cargo-home/bin/cargo" "+79c0559184f27f4433a6fbc260b950d06d4a4889" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: binary `summarize_p_l0_adj` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /opt/rustwide/target/.../summarize_p_l0_adj
[INFO] [stderr]   |                          ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `summarize-p-l0-adj`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/summarize_p_l0_adj.rs
[INFO] [stderr] 1 + src/bin/summarize-p-l0-adj.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: `quadtree` (manifest) generated 1 warning
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling libc v0.2.176
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking cfg-if v1.0.3
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling find-msvc-tools v0.1.2
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling unicode-ident v1.0.19
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking bytes v1.10.1
[INFO] [stderr]    Compiling lock_api v0.4.13
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]     Checking iana-time-zone v0.1.64
[INFO] [stderr]    Compiling ahash v0.8.12
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[INFO] [stderr]    Compiling equivalent v1.0.2
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking bitflags v2.9.4
[INFO] [stderr]    Compiling flatbuffers v25.9.23
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]     Checking foldhash v0.2.0
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]     Checking allocator-api2 v0.2.21
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]    Compiling toml_datetime v0.7.2
[INFO] [stderr]     Checking alloc-no-stdlib v2.0.4
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]     Checking alloc-stdlib v0.2.2
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking tracing-core v0.1.34
[INFO] [stderr]     Checking parking_lot v0.12.4
[INFO] [stderr]     Checking colorchoice v1.0.4
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]    Compiling indexmap v2.11.4
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]    Compiling hdf5-metno-types v0.10.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling cc v1.2.39
[INFO] [stderr]     Checking half v2.6.0
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]     Checking anstyle-query v1.1.4
[INFO] [stderr]     Checking ryu v1.0.20
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.1
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]     Checking anstream v0.6.20
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]    Compiling regex-automata v0.4.11
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking brotli-decompressor v5.0.0
[INFO] [stderr]     Checking crc32fast v1.5.0
[INFO] [stderr]     Checking special v0.10.3
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]     Checking integer-encoding v3.0.4
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]     Checking random v0.13.2
[INFO] [stderr]     Checking base64 v0.22.1
[INFO] [stderr]     Checking pin-project-lite v0.2.16
[INFO] [stderr]     Checking clap_lex v0.7.5
[INFO] [stderr]     Checking log v0.4.28
[INFO] [stderr]    Compiling hdf5-metno v0.10.1
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]    Compiling virtue v0.0.18
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking ascii v1.1.0
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking clap_builder v4.5.48
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.44
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking brotli v8.0.2
[INFO] [stderr]     Checking lz4_flex v0.11.5
[INFO] [stderr]     Checking csv-core v0.1.12
[INFO] [stderr]    Compiling bincode_derive v2.0.1
[INFO] [stderr]    Compiling toml_parser v1.0.3
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking probability v0.20.3
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking arrow-buffer v55.2.0
[INFO] [stderr]    Compiling regex v1.11.3
[INFO] [stderr]    Compiling toml_edit v0.23.6
[INFO] [stderr]     Checking sharded-slab v0.1.7
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking matchers v0.2.0
[INFO] [stderr]     Checking arrow-data v55.2.0
[INFO] [stderr]     Checking thread_local v1.1.9
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking nu-ansi-term v0.50.1
[INFO] [stderr]     Checking typenum v1.20.0
[INFO] [stderr]     Checking itoa v1.0.15
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]     Checking unty v0.0.4
[INFO] [stderr]     Checking mimalloc v0.1.48
[INFO] [stderr]     Checking bincode v2.0.1
[INFO] [stderr]     Checking rand_xoshiro v0.6.0
[INFO] [stderr]     Checking constriction v0.4.2
[INFO] [stderr]    Compiling hdf5-metno-sys v0.10.1
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]    Compiling proc-macro-crate v3.4.0
[INFO] [stderr]     Checking arrow-array v55.2.0
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking stream-vbyte v0.4.1
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]    Compiling tracing-attributes v0.1.30
[INFO] [stderr]    Compiling clap_derive v4.5.47
[INFO] [stderr]    Compiling hdf5-metno-derive v0.9.2
[INFO] [stderr]     Checking sprs v0.11.2
[INFO] [stderr]     Checking tracing v0.1.41
[INFO] [stderr]     Checking tracing-subscriber v0.3.20
[INFO] [stderr]     Checking arrow-select v55.2.0
[INFO] [stderr]     Checking arrow-ipc v55.2.0
[INFO] [stderr]     Checking clap v4.5.48
[INFO] [stderr]     Checking nalgebra v0.34.2
[INFO] [stderr]     Checking arrow-cast v55.2.0
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking parquet v55.2.0
[INFO] [stderr]     Checking quadtree v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: fields `positions`, `row_order`, and `gene_order` are never read
[INFO] [stdout]     --> src/main.rs:2043:5
[INFO] [stdout]      |
[INFO] [stdout] 2041 | struct DecodedPayload {
[INFO] [stdout]      |        -------------- fields in this struct
[INFO] [stdout] 2042 |     encoded_blocks: Vec<EncodedClusterBlock>,
[INFO] [stdout] 2043 |     positions: Vec<DatalessPoint>,
[INFO] [stdout]      |     ^^^^^^^^^
[INFO] [stdout] 2044 |     row_order: Vec<u32>,
[INFO] [stdout]      |     ^^^^^^^^^
[INFO] [stdout] 2045 |     gene_order: Vec<u32>,
[INFO] [stdout]      |     ^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `positions`, `row_order`, and `gene_order` are never read
[INFO] [stdout]     --> src/main.rs:2043:5
[INFO] [stdout]      |
[INFO] [stdout] 2041 | struct DecodedPayload {
[INFO] [stdout]      |        -------------- fields in this struct
[INFO] [stdout] 2042 |     encoded_blocks: Vec<EncodedClusterBlock>,
[INFO] [stdout] 2043 |     positions: Vec<DatalessPoint>,
[INFO] [stdout]      |     ^^^^^^^^^
[INFO] [stdout] 2044 |     row_order: Vec<u32>,
[INFO] [stdout]      |     ^^^^^^^^^
[INFO] [stdout] 2045 |     gene_order: Vec<u32>,
[INFO] [stdout]      |     ^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] warning: unused dependency `rand`
[INFO] [stderr]   --> Cargo.toml:15:1
[INFO] [stderr]    |
[INFO] [stderr] 15 | rand = "0.9"
[INFO] [stderr]    | ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `rand`
[INFO] [stderr] warning: `quadtree` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 08s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f", kill_on_drop: false }`
[INFO] [stdout] 71301e57785c068f41ed7b368f193ba546bb5fb44ceae4232fc0a1857356371f
