[INFO] fetching crate perbase 1.4.0...
[INFO] documenting perbase-1.4.0 against 824336ad4127ce295849937a24c08a4aeff6ada7 for pr-162169
[INFO] extracting crate perbase 1.4.0 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate perbase 1.4.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate perbase 1.4.0
[INFO] tweaked toml for crates.io crate perbase 1.4.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate perbase 1.4.0 on toolchain 824336ad4127ce295849937a24c08a4aeff6ada7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate perbase 1.4.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded strum_macros v0.27.2
[INFO] [stderr]   Downloaded structopt v0.3.26
[INFO] [stderr]   Downloaded strum v0.27.2
[INFO] [stderr]   Downloaded structopt-derive v0.4.18
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.106
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.106
[INFO] [stderr]   Downloaded core_affinity v0.8.3
[INFO] [stderr]   Downloaded env_filter v0.1.4
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded lru_time_cache v0.11.11
[INFO] [stderr]   Downloaded crossbeam v0.8.4
[INFO] [stderr]   Downloaded fxhash v0.2.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded proc-macro-error2 v2.0.1
[INFO] [stderr]   Downloaded strum v0.23.0
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded proc-macro-error-attr2 v2.0.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded find-msvc-tools v0.1.5
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded libdeflater v1.25.0
[INFO] [stderr]   Downloaded nanorand v0.7.0
[INFO] [stderr]   Downloaded smartstring v1.0.1
[INFO] [stderr]   Downloaded toml_parser v1.0.4
[INFO] [stderr]   Downloaded grep-cli v0.1.12
[INFO] [stderr]   Downloaded toml_datetime v0.7.3
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.106
[INFO] [stderr]   Downloaded cmake v0.1.54
[INFO] [stderr]   Downloaded simba v0.5.1
[INFO] [stderr]   Downloaded clang-sys v1.8.1
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.106
[INFO] [stderr]   Downloaded js-sys v0.3.83
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded rust-lapper v1.2.0
[INFO] [stderr]   Downloaded jiff-static v0.2.16
[INFO] [stderr]   Downloaded matrixmultiply v0.3.10
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded flate2 v1.1.5
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.31
[INFO] [stderr]   Downloaded toml_edit v0.23.9
[INFO] [stderr]   Downloaded cc v1.2.49
[INFO] [stderr]   Downloaded indexmap v2.12.1
[INFO] [stderr]   Downloaded bumpalo v3.19.0
[INFO] [stderr]   Downloaded statrs v0.15.0
[INFO] [stderr]   Downloaded rust-htslib v0.51.0
[INFO] [stderr]   Downloaded libdeflate-sys v1.25.0
[INFO] [stderr]   Downloaded bindgen v0.69.5
[INFO] [stderr]   Downloaded proptest v1.9.0
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded zerocopy v0.8.31
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded nalgebra v0.27.1
[INFO] [stderr]   Downloaded libc v0.2.178
[INFO] [stderr]   Downloaded jiff v0.2.16
[INFO] [stderr]   Downloaded libz-sys v1.1.23
[INFO] [stderr]   Downloaded gzp v2.0.2
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0
[INFO] running `Command { std: "docker" "start" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0" "/opt/rustwide/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0" "/opt/rustwide/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling libc v0.2.178
[INFO] [stderr]    Compiling find-msvc-tools v0.1.5
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling zerocopy v0.8.31
[INFO] [stderr]     Checking litemap v0.8.1
[INFO] [stderr]     Checking writeable v0.6.2
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling icu_normalizer_data v2.1.1
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling icu_properties_data v2.1.2
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling typenum v1.19.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking log v0.4.29
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]    Compiling syn v2.0.111
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking getrandom v0.2.16
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking lock_api v0.4.14
[INFO] [stderr]    Compiling cc v1.2.49
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling unicode-segmentation v1.12.0
[INFO] [stderr]     Checking unicode-width v0.1.14
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking spin v0.9.8
[INFO] [stderr]     Checking nanorand v0.7.0
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling smartstring v1.0.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking futures-core v0.3.31
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]     Checking indexmap v2.12.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking ansi_term v0.12.1
[INFO] [stderr]     Checking futures-sink v0.3.31
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking flume v0.11.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking core_affinity v0.8.3
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling libdeflate-sys v1.25.0
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling libz-ng-sys v1.1.23
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking crossbeam-queue v0.3.12
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking strum v0.23.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking jiff v0.2.16
[INFO] [stderr]     Checking bytes v1.11.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking env_filter v0.1.4
[INFO] [stderr]     Checking termcolor v1.4.1
[INFO] [stderr]     Checking globset v0.4.18
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking crossbeam v0.8.4
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking rust-lapper v1.2.0
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking lru_time_cache v0.11.11
[INFO] [stderr]     Checking grep-cli v0.1.12
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking libdeflater v1.25.0
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling strum_macros v0.27.2
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking env_logger v0.11.8
[INFO] [stderr]     Checking strum v0.27.2
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.7
[INFO] [stderr]     Checking structopt v0.3.26
[INFO] [stderr]     Checking flate2 v1.1.5
[INFO] [stderr]     Checking gzp v2.0.2
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking rust-htslib v0.51.0
[INFO] [stderr]  Documenting perbase v1.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking perbase v1.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: redundant explicit link target
[INFO] [stdout]   --> src/lib/par_granges.rs:93:70
[INFO] [stdout]    |
[INFO] [stdout] 93 |     /// * `processor`- Something that implements [`RegionProcessor`](RegionProcessor)
[INFO] [stdout]    |                                                   -----------------  ^^^^^^^^^^^^^^^ explicit target is redundant
[INFO] [stdout]    |                                                   |
[INFO] [stdout]    |                                                   because label contains path that resolves to same destination
[INFO] [stdout]    |
[INFO] [stdout]    = note: when a link's destination is not specified,
[INFO] [stdout]            the label is used to resolve intra-doc links
[INFO] [stdout]    = note: `#[warn(rustdoc::redundant_explicit_links)]` on by default
[INFO] [stdout] help: remove explicit link target
[INFO] [stdout]    |
[INFO] [stdout] 93 -     /// * `processor`- Something that implements [`RegionProcessor`](RegionProcessor)
[INFO] [stdout] 93 +     /// * `processor`- Something that implements [`RegionProcessor`]
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/lib/reference.rs:3:19
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout]   = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from <https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs>
[INFO] [stdout]   |                   +                                                                           +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/base_depth.rs:168:32
[INFO] [stdout]     |
[INFO] [stdout] 168 | /// Holds the info needed for [par_io::RegionProcessor] implementation
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::ReadFilter`
[INFO] [stdout]    --> src/commands/base_depth.rs:184:28
[INFO] [stdout]     |
[INFO] [stdout] 184 |     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout]     |                            ^^^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout]     |
[INFO] [stdout] help: there's a similarly named item `Position`
[INFO] [stdout]     |
[INFO] [stdout] 184 -     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout] 184 +     /// implementation of [Position::ReadFilter] that will be used
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/base_depth.rs:232:16
[INFO] [stdout]     |
[INFO] [stdout] 232 | /// Implement [par_io::RegionProcessor] for [BaseProcessor]
[INFO] [stdout]     |                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:186:32
[INFO] [stdout]     |
[INFO] [stdout] 186 | /// Holds the info needed for [par_io::RegionProcessor] implementation
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::ReadFilter`
[INFO] [stdout]    --> src/commands/only_depth.rs:200:28
[INFO] [stdout]     |
[INFO] [stdout] 200 |     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout]     |                            ^^^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout]     |
[INFO] [stdout] help: there's a similarly named item `Position`
[INFO] [stdout]     |
[INFO] [stdout] 200 -     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout] 200 +     /// implementation of [Position::ReadFilter] that will be used
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:461:16
[INFO] [stdout]     |
[INFO] [stdout] 461 | /// Implement [par_io::RegionProcessor] for [SimpleProcessor]
[INFO] [stdout]     |                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `SimpleProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:461:46
[INFO] [stdout]     |
[INFO] [stdout] 461 | /// Implement [par_io::RegionProcessor] for [SimpleProcessor]
[INFO] [stdout]     |                                              ^^^^^^^^^^^^^^^ no item named `SimpleProcessor` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `pipeup_position::PileupPosition`
[INFO] [stdout]    --> src/commands/base_depth.rs:234:21
[INFO] [stdout]     |
[INFO] [stdout] 234 |     /// Objects of [pipeup_position::PileupPosition] will be returned by each call to [BaseProcessor::process_region]
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `pipeup_position` in scope
[INFO] [stdout]     |
[INFO] [stdout] help: there's a similarly named item `PileupPosition`
[INFO] [stdout]     |
[INFO] [stdout] 234 -     /// Objects of [pipeup_position::PileupPosition] will be returned by each call to [BaseProcessor::process_region]
[INFO] [stdout] 234 +     /// Objects of [PileupPosition::PileupPosition] will be returned by each call to [BaseProcessor::process_region]
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::Position`
[INFO] [stdout]    --> src/commands/only_depth.rs:463:21
[INFO] [stdout]     |
[INFO] [stdout] 463 |     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout]     |
[INFO] [stdout] help: there's a similarly named item `Position`
[INFO] [stdout]     |
[INFO] [stdout] 463 -     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout] 463 +     /// Objects of [Position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `SimpleProcessor::process_region`
[INFO] [stdout]    --> src/commands/only_depth.rs:463:75
[INFO] [stdout]     |
[INFO] [stdout] 463 |     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |                                                                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `SimpleProcessor` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `chrom`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:12:55
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\t<depth>.
[INFO] [stdout]    |                                                       ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `start`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:12:64
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\t<depth>.
[INFO] [stdout]    |                                                                ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\`t<start>`\t<stop>\t<depth>.
[INFO] [stdout]    |                                                               +        +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `stop`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:12:73
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\t<depth>.
[INFO] [stdout]    |                                                                         ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\`t<stop>`\t<depth>.
[INFO] [stdout]    |                                                                        +       +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `depth`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:12:81
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\t<depth>.
[INFO] [stdout]    |                                                                                 ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\`t<depth>`.
[INFO] [stdout]    |                                                                                +        +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `stop`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:13:9
[INFO] [stdout]    |
[INFO] [stdout] 13 | /// The <stop> is optional. See documentation for explanation of headers that are accepted.
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 16s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]    Generated /opt/rustwide/target/doc/perbase_lib/index.html and 1 other file
[INFO] running `Command { std: "docker" "inspect" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0" "/opt/rustwide/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]  Documenting perbase v1.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: redundant explicit link target
[INFO] [stdout]   --> src/lib/par_granges.rs:93:70
[INFO] [stdout]    |
[INFO] [stdout] 93 |     /// * `processor`- Something that implements [`RegionProcessor`](RegionProcessor)
[INFO] [stdout]    |                                                   -----------------  ^^^^^^^^^^^^^^^ explicit target is redundant
[INFO] [stdout]    |                                                   |
[INFO] [stdout]    |                                                   because label contains path that resolves to same destination
[INFO] [stdout]    |
[INFO] [stdout]    = note: when a link's destination is not specified,
[INFO] [stdout]            the label is used to resolve intra-doc links
[INFO] [stdout]    = note: `#[warn(rustdoc::redundant_explicit_links)]` on by default
[INFO] [stdout] help: remove explicit link target
[INFO] [stdout]    |
[INFO] [stdout] 93 -     /// * `processor`- Something that implements [`RegionProcessor`](RegionProcessor)
[INFO] [stdout] 93 +     /// * `processor`- Something that implements [`RegionProcessor`]
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/lib/reference.rs:3:19
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout]   = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from <https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs>
[INFO] [stdout]   |                   +                                                                           +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.97s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]    Generated /opt/rustwide/target/doc/perbase_lib/index.html
[INFO] running `Command { std: "docker" "inspect" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0", kill_on_drop: false }`
[INFO] [stdout] 555c91c8740def8f218c101f10ed1f40c8dc60429909661892dceaa6666053d0
