[INFO] cloning repository https://github.com/fulcrumgenomics/fgumi
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fulcrumgenomics/fgumi" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c028108142721ae2f0f892cf441f3544df60da35
[INFO] documenting fulcrumgenomics/fgumi against 824336ad4127ce295849937a24c08a4aeff6ada7 for pr-162169
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-6-tc1/source/.cargo/config.toml
[INFO] removed /workspace/builds/worker-6-tc1/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/fulcrumgenomics/fgumi
[INFO] finished tweaking git repo https://github.com/fulcrumgenomics/fgumi
[INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/fgumi written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/fulcrumgenomics/fgumi on toolchain 824336ad4127ce295849937a24c08a4aeff6ada7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/fulcrumgenomics/fgumi already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715
[INFO] running `Command { std: "docker" "start" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715" "/opt/rustwide/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715" "/opt/rustwide/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]    Compiling built v0.8.1
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[INFO] [stderr]    Compiling fgumi v0.7.0 (/opt/rustwide/workdir)
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[INFO] [stderr]  Documenting fgumi v0.7.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]     --> src/lib/commands/dedup.rs:1618:22
[INFO] [stdout]      |
[INFO] [stdout] 1618 |                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |                      ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]      |
[INFO] [stdout] 1618 -                     .fetch_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout] 1618 +                     .try_update(Ordering::Relaxed, Ordering::Relaxed, |current| {
[INFO] [stdout]      |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> src/lib/unified_pipeline/base.rs:737:10
[INFO] [stdout]     |
[INFO] [stdout] 737 |         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |          ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 737 -         .fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 737 +         .try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `std::sync::atomic::Atomic::<u64>::fetch_update`: renamed to `try_update` for consistency
[INFO] [stdout]    --> src/lib/unified_pipeline/base.rs:997:33
[INFO] [stdout]     |
[INFO] [stdout] 997 |         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |                                 ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: replace the use of the deprecated method
[INFO] [stdout]     |
[INFO] [stdout] 997 -         let _ = self.heap_bytes.fetch_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout] 997 +         let _ = self.heap_bytes.try_update(Ordering::AcqRel, Ordering::Acquire, |current| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/fgumi_lib/index.html and 1 other file
[INFO] running `Command { std: "docker" "inspect" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715" "/opt/rustwide/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]  Documenting fgumi v0.7.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.18s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/fgumi_lib/index.html
[INFO] running `Command { std: "docker" "inspect" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715", kill_on_drop: false }`
[INFO] [stdout] 7779bf3a239d6609e189471a39556bc2be462ee126c2e485fbcb54cf8732b715
