[INFO] cloning repository https://github.com/tom-murray98/bamwhat
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tom-murray98/bamwhat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftom-murray98%2Fbamwhat", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftom-murray98%2Fbamwhat'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f7747de13a517f91589f5380724d6fa308acc5cb
[INFO] documenting tom-murray98/bamwhat against 824336ad4127ce295849937a24c08a4aeff6ada7 for pr-162169
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftom-murray98%2Fbamwhat" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/tom-murray98/bamwhat
[INFO] finished tweaking git repo https://github.com/tom-murray98/bamwhat
[INFO] tweaked toml for git repo https://github.com/tom-murray98/bamwhat written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/tom-murray98/bamwhat on toolchain 824336ad4127ce295849937a24c08a4aeff6ada7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/tom-murray98/bamwhat already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rust-htslib v1.0.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded libz-sys v1.1.29
[INFO] [stderr]   Downloaded curl-sys v0.4.90+curl-8.21.0
[INFO] [stderr]   Downloaded hts-sys v2.2.1
[INFO] [stderr]   Downloaded openssl-src v300.6.1+3.6.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050
[INFO] running `Command { std: "docker" "start" "c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050" "/opt/rustwide/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050" "/opt/rustwide/cargo-home/bin/cargo" "+824336ad4127ce295849937a24c08a4aeff6ada7" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]    Compiling glob v0.3.4
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling memchr v2.8.3
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling bindgen v0.72.1
[INFO] [stderr]    Compiling either v1.16.0
[INFO] [stderr]    Compiling rustversion v1.0.23
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking smallvec v1.15.2
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling bitflags v2.13.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustc-hash v2.1.3
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling quote v1.0.47
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling syn v3.0.3
[INFO] [stderr]    Compiling cc v1.4.0
[INFO] [stderr]    Compiling regex-automata v0.4.16
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling openssl-src v300.6.1+3.6.3
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling zmij v1.0.23
[INFO] [stderr]    Compiling thiserror v2.0.19
[INFO] [stderr]    Compiling openssl-sys v0.9.117
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling regex v1.13.1
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.90+curl-8.21.0
[INFO] [stderr]    Compiling serde v1.0.229
[INFO] [stderr]    Compiling serde_json v1.0.151
[INFO] [stderr]     Checking clap_builder v4.6.2
[INFO] [stderr]    Compiling thiserror-impl v2.0.19
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling clap_derive v4.6.4
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]    Compiling displaydoc v0.2.6
[INFO] [stderr]     Checking zerofrom v0.1.8
[INFO] [stderr]     Checking yoke v0.8.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking zerotrie v0.2.4
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking zerovec v0.11.6
[INFO] [stderr]     Checking clap v4.6.4
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking tinystr v0.8.3
[INFO] [stderr]     Checking potential_utf v0.1.5
[INFO] [stderr]     Checking icu_collections v2.2.0
[INFO] [stderr]     Checking icu_locale_core v2.2.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling hts-sys v2.2.1
[INFO] [stderr]     Checking icu_provider v2.2.0
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]     Checking icu_properties v2.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.2
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050", kill_on_drop: false }`
[INFO] [stdout] c3578353b5fa77a40065351b3a3e408205ba558340238ef154a25df7aadc5050
