[INFO] cloning repository https://github.com/briannadon/bsa-gprime
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/briannadon/bsa-gprime" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbriannadon%2Fbsa-gprime", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbriannadon%2Fbsa-gprime'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7c3d0e62e51b3ec079c5bc1b16c89e4dee5ae812
[INFO] documenting briannadon/bsa-gprime against da3f5c31e5535b3dc210067de660a45784ae1e9c for pr-162169
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbriannadon%2Fbsa-gprime" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/briannadon/bsa-gprime
[INFO] finished tweaking git repo https://github.com/briannadon/bsa-gprime
[INFO] tweaked toml for git repo https://github.com/briannadon/bsa-gprime written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/briannadon/bsa-gprime on toolchain da3f5c31e5535b3dc210067de660a45784ae1e9c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/briannadon/bsa-gprime already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859
[INFO] running `Command { std: "docker" "start" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859" "/opt/rustwide/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859" "/opt/rustwide/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling find-msvc-tools v0.1.9
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]     Checking cfg-if v1.0.4
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]     Checking writeable v0.6.2
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]    Compiling zerocopy v0.8.39
[INFO] [stderr]     Checking litemap v0.8.1
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]     Checking simd-adler32 v0.3.8
[INFO] [stderr]    Compiling icu_normalizer_data v2.1.1
[INFO] [stderr]    Compiling icu_properties_data v2.1.2
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]     Checking flate2 v1.1.8
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking fdeflate v0.3.7
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling typenum v1.19.0
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]     Checking png v0.17.16
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling cc v1.2.55
[INFO] [stderr]     Checking color_quant v1.1.0
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking ttf-parser v0.25.1
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking utf8_iter v1.0.4
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]     Checking anstyle-query v1.1.5
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking plotters-backend v0.3.7
[INFO] [stderr]     Checking colorchoice v1.0.4
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking jpeg-decoder v0.3.2
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]     Checking unicode-width v0.2.2
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking ab_glyph_rasterizer v0.1.10
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking image v0.24.9
[INFO] [stderr]     Checking clap_lex v0.7.7
[INFO] [stderr]     Checking clap_builder v4.5.56
[INFO] [stderr]     Checking console v0.15.11
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]     Checking plotters-svg v0.3.7
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking ryu v1.0.22
[INFO] [stderr]     Checking owned_ttf_parser v0.25.1
[INFO] [stderr]     Checking itoa v1.0.17
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ab_glyph v0.2.32
[INFO] [stderr]     Checking indicatif v0.17.11
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking plotters-bitmap v0.3.7
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking clap v4.5.56
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking rust-htslib v1.0.0
[INFO] [stderr]  Documenting bsa-gprime v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `G`
[INFO] [stdout]   --> src/significance.rs:14:9
[INFO] [stdout]    |
[INFO] [stdout] 14 | /// - E[G] ≈ 1 + C/(2n_s)
[INFO] [stdout]    |         ^ no item named `G` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]    = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `G`
[INFO] [stdout]   --> src/significance.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | /// - Var[G] ≈ 2 + 1/(2C) + (1+2C)/n_s + C²(4n_s-1)/(8n_s³)
[INFO] [stdout]    |           ^ no item named `G` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `G`
[INFO] [stdout]   --> src/significance.rs:39:19
[INFO] [stdout]    |
[INFO] [stdout] 39 | /// Var[G'] = Var[G] × Σk_j² + C²(4n_s-1)/(8n_s³) × Σ_{i≠j}(1-2r_ij)²k_ik_j
[INFO] [stdout]    |                   ^ no item named `G` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `G`
[INFO] [stdout]   --> src/smoothing.rs:26:19
[INFO] [stdout]    |
[INFO] [stdout] 26 | /// Var[G'] = Var[G] × Σk_j² + C²(4n_s-1)/(8n_s³) × Σ_{i≠j}(1-2r_ij)²k_ik_j
[INFO] [stdout]    |                   ^ no item named `G` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `f64`
[INFO] [stdout]    --> src/smoothing.rs:145:18
[INFO] [stdout]     |
[INFO] [stdout] 145 | /// Returns a Vec<f64> of smoothed G' values, one per input result.
[INFO] [stdout]     |                  ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]     |
[INFO] [stdout] 145 | /// Returns a `Vec<f64>` of smoothed G' values, one per input result.
[INFO] [stdout]     |               +        +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 55.91s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/bsa_gprime/index.html
[INFO] running `Command { std: "docker" "inspect" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859" "/opt/rustwide/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]  Documenting bsa-gprime v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `G`
[INFO] [stdout]   --> src/significance.rs:14:9
[INFO] [stdout]    |
[INFO] [stdout] 14 | /// - E[G] ≈ 1 + C/(2n_s)
[INFO] [stdout]    |         ^ no item named `G` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]    = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `G`
[INFO] [stdout]   --> src/significance.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | /// - Var[G] ≈ 2 + 1/(2C) + (1+2C)/n_s + C²(4n_s-1)/(8n_s³)
[INFO] [stdout]    |           ^ no item named `G` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `G`
[INFO] [stdout]   --> src/significance.rs:39:19
[INFO] [stdout]    |
[INFO] [stdout] 39 | /// Var[G'] = Var[G] × Σk_j² + C²(4n_s-1)/(8n_s³) × Σ_{i≠j}(1-2r_ij)²k_ik_j
[INFO] [stdout]    |                   ^ no item named `G` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `G`
[INFO] [stdout]   --> src/smoothing.rs:26:19
[INFO] [stdout]    |
[INFO] [stdout] 26 | /// Var[G'] = Var[G] × Σk_j² + C²(4n_s-1)/(8n_s³) × Σ_{i≠j}(1-2r_ij)²k_ik_j
[INFO] [stdout]    |                   ^ no item named `G` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `f64`
[INFO] [stdout]    --> src/smoothing.rs:145:18
[INFO] [stdout]     |
[INFO] [stdout] 145 | /// Returns a Vec<f64> of smoothed G' values, one per input result.
[INFO] [stdout]     |                  ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]     |
[INFO] [stdout] 145 | /// Returns a `Vec<f64>` of smoothed G' values, one per input result.
[INFO] [stdout]     |               +        +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.79s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/bsa_gprime/index.html
[INFO] running `Command { std: "docker" "inspect" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859", kill_on_drop: false }`
[INFO] [stdout] 260eb7edbce1ce26c4572d147a103a685c22f69e8c8df2fe528250cad3047859
