[INFO] cloning repository https://github.com/em-baggie/phage_cocktail
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/em-baggie/phage_cocktail" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fem-baggie%2Fphage_cocktail", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fem-baggie%2Fphage_cocktail'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9f4343109abf0be47ba5a966e0f5c218bab1e91f
[INFO] documenting em-baggie/phage_cocktail against da3f5c31e5535b3dc210067de660a45784ae1e9c for pr-162169
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fem-baggie%2Fphage_cocktail" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/em-baggie/phage_cocktail
[INFO] finished tweaking git repo https://github.com/em-baggie/phage_cocktail
[INFO] tweaked toml for git repo https://github.com/em-baggie/phage_cocktail written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/em-baggie/phage_cocktail on toolchain da3f5c31e5535b3dc210067de660a45784ae1e9c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/em-baggie/phage_cocktail already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr]   |
[INFO] [stderr]   = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr]   = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr]   = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded lockfree-object-pool v0.1.6
[INFO] [stderr]   Downloaded hashbrown v0.15.1
[INFO] [stderr]   Downloaded atoi_simd v0.16.0
[INFO] [stderr]   Downloaded zopfli v0.8.1
[INFO] [stderr]   Downloaded calamine v0.27.0
[INFO] [stderr]   Downloaded zip v2.5.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25
[INFO] running `Command { std: "docker" "start" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25" "/opt/rustwide/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25" "/opt/rustwide/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr]   |
[INFO] [stderr]   = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr]   = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr]   = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]     Checking encoding_rs v0.8.35
[INFO] [stderr]    Compiling zip v2.5.0
[INFO] [stderr]     Checking simd-adler32 v0.3.7
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]    Compiling serde v1.0.215
[INFO] [stderr]     Checking hashbrown v0.15.1
[INFO] [stderr]     Checking lockfree-object-pool v0.1.6
[INFO] [stderr]     Checking bumpalo v3.16.0
[INFO] [stderr]     Checking flate2 v1.0.35
[INFO] [stderr]     Checking fast-float2 v0.2.3
[INFO] [stderr]     Checking zopfli v0.8.1
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking atoi_simd v0.16.0
[INFO] [stderr]  Documenting graph_generator v0.1.0 (/opt/rustwide/workdir/graph_generator)
[INFO] [stderr]     Checking indexmap v2.6.0
[INFO] [stderr]     Checking codepage v0.1.2
[INFO] [stderr]     Checking quick-xml v0.37.5
[INFO] [stderr]     Checking search-methods v0.1.0 (/opt/rustwide/workdir/search-methods)
[INFO] [stderr]  Documenting search-methods v0.1.0 (/opt/rustwide/workdir/search-methods)
[INFO] [stderr]     Checking calamine v0.27.0
[INFO] [stderr]     Checking data-parser v0.1.0 (/opt/rustwide/workdir/data-parser)
[INFO] [stderr]  Documenting data-parser v0.1.0 (/opt/rustwide/workdir/data-parser)
[INFO] [stderr]  Documenting phage-cocktail-generator v0.1.0 (/opt/rustwide/workdir/phage-cocktail-generator)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.37s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/data_parser/index.html and 3 other files
[INFO] running `Command { std: "docker" "inspect" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25" "/opt/rustwide/cargo-home/bin/cargo" "+da3f5c31e5535b3dc210067de660a45784ae1e9c" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr]   |
[INFO] [stderr]   = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr]   = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr]   = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr] error: manifest path `/opt/rustwide/workdir/Cargo.toml` is a virtual manifest, but this command requires running against an actual package in this workspace
[INFO] running `Command { std: "docker" "inspect" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25", kill_on_drop: false }`
[INFO] [stdout] 931fd63024392e383c18dfd657e6d68a5549ad1b049d426ced023fa749da8a25
