[INFO] cloning repository https://github.com/wheaton5/distinguishing_kmers
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wheaton5/distinguishing_kmers" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 956d14d256c7fea54b7e8b072fc67bc99e98e594
[INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 65 packages to highest compatible versions
[INFO] [stderr]       Adding aho-corasick v1.1.5
[INFO] [stderr]  Downgrading ansi_term v0.11.0 -> v0.9.0
[INFO] [stderr]       Adding bindgen v0.73.2
[INFO] [stderr]       Adding bio-types v1.0.2 (available: v1.0.4)
[INFO] [stderr]       Adding bitflags v0.9.1
[INFO] [stderr]       Adding bitflags v2.13.1
[INFO] [stderr]       Adding boomphf v0.3.1 (https://github.com/10XGenomics/rust-boomphf?branch=master#56c3f192)
[INFO] [stderr]       Adding bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]     Updating cc v1.0.28 -> v1.4.5
[INFO] [stderr]       Adding cexpr v0.6.0
[INFO] [stderr]       Adding cfg-if v1.0.4
[INFO] [stderr]       Adding clang-sys v1.9.1
[INFO] [stderr]  Downgrading clap v2.32.0 -> v2.27.1 (available: v2.34.0)
[INFO] [stderr]       Adding custom_derive v0.1.7
[INFO] [stderr]       Adding derive-new v0.5.9
[INFO] [stderr]       Adding dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#a640f47b)
[INFO] [stderr]       Adding find-msvc-tools v0.1.12
[INFO] [stderr]       Adding fs-utils v1.1.4
[INFO] [stderr]       Adding glob v0.3.4
[INFO] [stderr]       Adding heck v0.5.0
[INFO] [stderr]       Adding idna v0.1.5
[INFO] [stderr]       Adding ieee754 v0.2.6
[INFO] [stderr]       Adding lazy_static v0.2.11
[INFO] [stderr]     Updating libc v0.2.46 -> v0.2.189
[INFO] [stderr]       Adding libloading v0.8.9
[INFO] [stderr]       Adding libz-sys v1.1.29
[INFO] [stderr]       Adding linear-map v1.2.0
[INFO] [stderr]       Adding lzma-sys v0.1.20
[INFO] [stderr]       Adding matches v0.1.10
[INFO] [stderr]       Adding memchr v2.8.3
[INFO] [stderr]       Adding minimal-lexical v0.2.1
[INFO] [stderr]       Adding newtype_derive v0.1.6
[INFO] [stderr]       Adding nom v7.1.3
[INFO] [stderr]       Adding percent-encoding v1.0.1
[INFO] [stderr]       Adding pkg-config v0.3.34
[INFO] [stderr]       Adding prettyplease v0.3.0
[INFO] [stderr]       Adding proc-macro2 v1.0.107
[INFO] [stderr]       Adding quick-error v1.2.3
[INFO] [stderr]       Adding quote v1.0.47
[INFO] [stderr]       Adding regex v1.13.1
[INFO] [stderr]       Adding regex-automata v0.4.18
[INFO] [stderr]       Adding regex-syntax v0.8.11
[INFO] [stderr]       Adding rust-htslib v0.24.0
[INFO] [stderr]       Adding rustc-hash v2.1.3
[INFO] [stderr]       Adding rustc_version v0.1.7
[INFO] [stderr]       Adding rustversion v1.0.23
[INFO] [stderr]       Adding semver v0.1.20
[INFO] [stderr]       Adding shlex v2.0.1
[INFO] [stderr]  Downgrading strsim v0.7.0 -> v0.6.0
[INFO] [stderr]       Adding strum_macros v0.26.4
[INFO] [stderr]       Adding syn v1.0.109
[INFO] [stderr]       Adding syn v2.0.119
[INFO] [stderr]       Adding syn v3.0.5
[INFO] [stderr]  Downgrading textwrap v0.10.0 -> v0.9.0
[INFO] [stderr]       Adding thiserror v1.0.69
[INFO] [stderr]       Adding thiserror-impl v1.0.69
[INFO] [stderr]       Adding tinyvec v1.13.2
[INFO] [stderr]       Adding tinyvec_macros v0.1.1
[INFO] [stderr]       Adding unicode-bidi v0.3.18
[INFO] [stderr]       Adding unicode-ident v1.0.24
[INFO] [stderr]       Adding unicode-normalization v0.1.25
[INFO] [stderr]       Adding url v1.7.2
[INFO] [stderr]       Adding vcpkg v0.2.15
[INFO] [stderr]       Adding windows-link v0.2.1
[INFO] [stderr]       Adding yaml-rust v0.3.5
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers
[INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds


overridden task result to prepare-fail:timeout

Caused by:
    0: uncategorized prepare error
    1: no output for 300 seconds