[INFO] cloning repository https://github.com/wheaton5/distinguishing_kmers [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wheaton5/distinguishing_kmers" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 956d14d256c7fea54b7e8b072fc67bc99e98e594 [INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 65 packages to highest compatible versions [INFO] [stderr] Adding aho-corasick v1.1.5 [INFO] [stderr] Downgrading ansi_term v0.11.0 -> v0.9.0 [INFO] [stderr] Adding bindgen v0.73.2 [INFO] [stderr] Adding bio-types v1.0.2 (available: v1.0.4) [INFO] [stderr] Adding bitflags v0.9.1 [INFO] [stderr] Adding bitflags v2.13.1 [INFO] [stderr] Adding boomphf v0.3.1 (https://github.com/10XGenomics/rust-boomphf?branch=master#56c3f192) [INFO] [stderr] Adding bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Updating cc v1.0.28 -> v1.4.5 [INFO] [stderr] Adding cexpr v0.6.0 [INFO] [stderr] Adding cfg-if v1.0.4 [INFO] [stderr] Adding clang-sys v1.9.1 [INFO] [stderr] Downgrading clap v2.32.0 -> v2.27.1 (available: v2.34.0) [INFO] [stderr] Adding custom_derive v0.1.7 [INFO] [stderr] Adding derive-new v0.5.9 [INFO] [stderr] Adding dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#a640f47b) [INFO] [stderr] Adding find-msvc-tools v0.1.12 [INFO] [stderr] Adding fs-utils v1.1.4 [INFO] [stderr] Adding glob v0.3.4 [INFO] [stderr] Adding heck v0.5.0 [INFO] [stderr] Adding idna v0.1.5 [INFO] [stderr] Adding ieee754 v0.2.6 [INFO] [stderr] Adding lazy_static v0.2.11 [INFO] [stderr] Updating libc v0.2.46 -> v0.2.189 [INFO] [stderr] Adding libloading v0.8.9 [INFO] [stderr] Adding libz-sys v1.1.29 [INFO] [stderr] Adding linear-map v1.2.0 [INFO] [stderr] Adding lzma-sys v0.1.20 [INFO] [stderr] Adding matches v0.1.10 [INFO] [stderr] Adding memchr v2.8.3 [INFO] [stderr] Adding minimal-lexical v0.2.1 [INFO] [stderr] Adding newtype_derive v0.1.6 [INFO] [stderr] Adding nom v7.1.3 [INFO] [stderr] Adding percent-encoding v1.0.1 [INFO] [stderr] Adding pkg-config v0.3.34 [INFO] [stderr] Adding prettyplease v0.3.0 [INFO] [stderr] Adding proc-macro2 v1.0.107 [INFO] [stderr] Adding quick-error v1.2.3 [INFO] [stderr] Adding quote v1.0.47 [INFO] [stderr] Adding regex v1.13.1 [INFO] [stderr] Adding regex-automata v0.4.18 [INFO] [stderr] Adding regex-syntax v0.8.11 [INFO] [stderr] Adding rust-htslib v0.24.0 [INFO] [stderr] Adding rustc-hash v2.1.3 [INFO] [stderr] Adding rustc_version v0.1.7 [INFO] [stderr] Adding rustversion v1.0.23 [INFO] [stderr] Adding semver v0.1.20 [INFO] [stderr] Adding shlex v2.0.1 [INFO] [stderr] Downgrading strsim v0.7.0 -> v0.6.0 [INFO] [stderr] Adding strum_macros v0.26.4 [INFO] [stderr] Adding syn v1.0.109 [INFO] [stderr] Adding syn v2.0.119 [INFO] [stderr] Adding syn v3.0.5 [INFO] [stderr] Downgrading textwrap v0.10.0 -> v0.9.0 [INFO] [stderr] Adding thiserror v1.0.69 [INFO] [stderr] Adding thiserror-impl v1.0.69 [INFO] [stderr] Adding tinyvec v1.13.2 [INFO] [stderr] Adding tinyvec_macros v0.1.1 [INFO] [stderr] Adding unicode-bidi v0.3.18 [INFO] [stderr] Adding unicode-ident v1.0.24 [INFO] [stderr] Adding unicode-normalization v0.1.25 [INFO] [stderr] Adding url v1.7.2 [INFO] [stderr] Adding vcpkg v0.2.15 [INFO] [stderr] Adding windows-link v0.2.1 [INFO] [stderr] Adding yaml-rust v0.3.5 [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] checking wheaton5/distinguishing_kmers against 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 for pr-161253 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fdistinguishing_kmers" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] finished tweaking git repo https://github.com/wheaton5/distinguishing_kmers [INFO] tweaked toml for git repo https://github.com/wheaton5/distinguishing_kmers written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/wheaton5/distinguishing_kmers on toolchain 65c7d39f9c2b9d5c316725cb48fa3d360c64c663 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/wheaton5/distinguishing_kmers already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65c7d39f9c2b9d5c316725cb48fa3d360c64c663" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] warning: `distinguishing_kmers` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/wheaton5/dna_io.git` [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds overridden task result to prepare-fail:timeout Caused by: 0: uncategorized prepare error 1: no output for 300 seconds