[INFO] cloning repository https://github.com/jianshu93/DartUniFrac [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/jianshu93/DartUniFrac" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjianshu93%2FDartUniFrac", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjianshu93%2FDartUniFrac'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a291edffa2330d667a895d00c9fd094e5b2e3823 [INFO] checking jianshu93/DartUniFrac against 16d1ffac17ad8b739e32483ac2e65fe7e1804977 for pr-161154-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjianshu93%2FDartUniFrac" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-7-tc1/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/jianshu93/DartUniFrac [INFO] finished tweaking git repo https://github.com/jianshu93/DartUniFrac [INFO] tweaked toml for git repo https://github.com/jianshu93/DartUniFrac written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/jianshu93/DartUniFrac on toolchain 16d1ffac17ad8b739e32483ac2e65fe7e1804977 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+16d1ffac17ad8b739e32483ac2e65fe7e1804977" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/jianshu93/DartUniFrac already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+16d1ffac17ad8b739e32483ac2e65fe7e1804977" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded succparen v0.0.3 [INFO] [stderr] Downloaded cblas-sys v0.1.4 [INFO] [stderr] Downloaded newick v0.11.0 [INFO] [stderr] Downloaded sorbus v0.12.1 [INFO] [stderr] Downloaded hdf5-metno v0.10.1 [INFO] [stderr] Downloaded hdf5-metno-types v0.10.2 [INFO] [stderr] Downloaded hdf5-metno-derive v0.9.3 [INFO] [stderr] Downloaded winreg v0.52.0 [INFO] [stderr] Downloaded fpcoa v0.1.2 [INFO] [stderr] Downloaded hdf5-metno-sys v0.10.1 [INFO] [stderr] Downloaded openblas-src v0.10.16 [INFO] [stderr] Downloaded lax v0.17.0 [INFO] [stderr] Downloaded openblas-build v0.10.16 [INFO] [stderr] Downloaded ocipkg v0.2.9 [INFO] [stderr] Downloaded katexit v0.1.5 [INFO] [stderr] Downloaded intel-mkl-src v0.8.1 [INFO] [stderr] Downloaded oci-spec v0.6.8 [INFO] [stderr] Downloaded intel-mkl-tool v0.8.1 [INFO] [stderr] Downloaded cauchy v0.4.0 [INFO] [stderr] Downloaded alga v0.9.3 [INFO] [stderr] Downloaded indxvec v1.9.6 [INFO] [stderr] Downloaded quantiles v0.7.1 [INFO] [stderr] Downloaded annembed v0.1.6 [INFO] [stderr] Downloaded memory-stats v1.2.0 [INFO] [stderr] Downloaded permutation v0.4.1 [INFO] [stderr] Downloaded lax v0.18.1 [INFO] [stderr] Downloaded hdf5-metno-src v0.9.5 [INFO] [stderr] Downloaded hnsw_rs v0.3.4 [INFO] [stderr] Downloaded mmap-rs v0.7.0 [INFO] [stderr] Downloaded lapack-sys v0.14.0 [INFO] [stderr] Downloaded anndists v0.1.5 [INFO] [stderr] Downloaded bson v2.15.0 [INFO] [stderr] Downloaded mt19937 v3.1.0 [INFO] [stderr] Downloaded accelerate-src v0.3.2 [INFO] [stderr] Downloaded tab-hash v0.4.0 [INFO] [stderr] Downloaded emojis v0.7.2 [INFO] [stderr] Downloaded blas-src v0.14.0 [INFO] [stderr] Downloaded lapack-sys v0.15.0 [INFO] [stderr] Downloaded dartminhash v0.1.8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db [INFO] running `Command { std: "docker" "start" "a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db" "/opt/rustwide/cargo-home/bin/cargo" "+16d1ffac17ad8b739e32483ac2e65fe7e1804977" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db" "/opt/rustwide/cargo-home/bin/cargo" "+16d1ffac17ad8b739e32483ac2e65fe7e1804977" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.186 [INFO] [stderr] Compiling zerocopy v0.8.52 [INFO] [stderr] Checking memchr v2.8.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling getrandom v0.4.2 [INFO] [stderr] Checking rand_core v0.10.1 [INFO] [stderr] Checking log v0.4.32 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Checking cpufeatures v0.3.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling regex-syntax v0.8.11 [INFO] [stderr] Checking smallvec v1.15.2 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Checking anstyle-parse v1.0.0 [INFO] [stderr] Checking chacha20 v0.10.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking is_terminal_polyfill v1.70.2 [INFO] [stderr] Checking array-init v2.1.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking anstyle-query v1.1.5 [INFO] [stderr] Checking colorchoice v1.0.5 [INFO] [stderr] Checking anstyle v1.0.14 [INFO] [stderr] Checking bitflags v2.13.0 [INFO] [stderr] Compiling nix v0.30.1 [INFO] [stderr] Checking thiserror v2.0.18 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Checking anstream v1.0.0 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Compiling radium v0.7.0 [INFO] [stderr] Checking hashbrown v0.17.1 [INFO] [stderr] Compiling enum-as-inner v0.6.1 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking walkdir v2.5.0 [INFO] [stderr] Checking tap v1.0.1 [INFO] [stderr] Checking bytes v1.11.1 [INFO] [stderr] Compiling serde_json v1.0.150 [INFO] [stderr] Checking rayon-core v1.13.0 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Compiling num-conv v0.2.2 [INFO] [stderr] Checking simd-adler32 v0.3.9 [INFO] [stderr] Checking itoa v1.0.18 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling winnow v1.0.3 [INFO] [stderr] Checking jiff v0.2.28 [INFO] [stderr] Compiling time-core v0.1.9 [INFO] [stderr] Checking rayon v1.12.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking indexmap v2.14.0 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Compiling cc v1.2.64 [INFO] [stderr] Checking combine v4.6.7 [INFO] [stderr] Compiling time-macros v0.2.29 [INFO] [stderr] Compiling pest v2.8.6 [INFO] [stderr] Checking regex-automata v0.4.14 [INFO] [stderr] Checking wyz v0.5.1 [INFO] [stderr] Checking getrandom v0.3.4 [INFO] [stderr] Checking rand_core v0.9.5 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Checking mt19937 v3.1.0 [INFO] [stderr] Checking parking_lot_core v0.9.12 [INFO] [stderr] Checking rand v0.10.2 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking parking_lot v0.12.5 [INFO] [stderr] Checking sysctl v0.6.0 [INFO] [stderr] Compiling cmake v0.1.58 [INFO] [stderr] Checking cpu-time v1.0.0 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling katexit v0.1.5 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Checking minimal-lexical v0.2.1 [INFO] [stderr] Checking funty v2.0.0 [INFO] [stderr] Compiling virtue v0.0.18 [INFO] [stderr] Compiling libz-sys v1.1.29 [INFO] [stderr] Compiling tab-hash v0.4.0 [INFO] [stderr] Compiling hdf5-metno-src v0.9.5 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Checking deranged v0.5.8 [INFO] [stderr] Compiling toml_datetime v1.1.1+spec-1.1.0 [INFO] [stderr] Compiling toml_parser v1.1.2+spec-1.1.0 [INFO] [stderr] Checking clap_lex v1.1.0 [INFO] [stderr] Checking dartminhash v0.1.8 [INFO] [stderr] Compiling pest_meta v2.8.6 [INFO] [stderr] Checking clap_builder v4.6.0 [INFO] [stderr] Checking nom v7.1.3 [INFO] [stderr] Compiling bincode_derive v2.0.1 [INFO] [stderr] Checking bitvec v1.0.1 [INFO] [stderr] Compiling toml_edit v0.25.12+spec-1.1.0 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking regex v1.10.6 [INFO] [stderr] Checking alga v0.9.3 [INFO] [stderr] Checking dartunifrac-core v0.3.2 (/opt/rustwide/workdir/crates/dartunifrac-core) [INFO] [stderr] Checking flate2 v1.1.9 [INFO] [stderr] Checking uuid v1.23.3 [INFO] [stderr] Checking env_filter v1.0.0 [INFO] [stderr] Checking lapack-sys v0.15.0 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Checking env_logger v0.11.10 [INFO] [stderr] Checking time v0.3.49 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking anndists v0.1.5 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking serde_bytes v0.11.19 [INFO] [stderr] Compiling annembed v0.1.6 [INFO] [stderr] Checking unty v0.0.4 [INFO] [stderr] Compiling hdf5-metno-types v0.10.2 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Checking siphasher v1.0.3 [INFO] [stderr] Checking bincode v2.0.1 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Compiling proc-macro-crate v3.5.0 [INFO] [stderr] Checking hdrhistogram v7.5.4 [INFO] [stderr] Compiling pest_generator v2.8.6 [INFO] [stderr] Checking phf_shared v0.12.1 [INFO] [stderr] Checking rand_xoshiro v0.7.0 [INFO] [stderr] Compiling hdf5-metno-sys v0.10.1 [INFO] [stderr] Checking lapack-sys v0.14.0 [INFO] [stderr] Checking memory-stats v1.2.0 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling fpcoa v0.1.2 [INFO] [stderr] Checking ascii v1.1.0 [INFO] [stderr] Compiling hdf5-metno v0.10.1 [INFO] [stderr] Checking typenum v1.20.1 [INFO] [stderr] Checking quantiles v0.7.1 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking indxvec v1.9.6 [INFO] [stderr] Checking identity-hash v0.1.0 [INFO] [stderr] Checking permutation v0.4.1 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking sorbus v0.12.1 [INFO] [stderr] Compiling hdf5-metno-derive v0.9.3 [INFO] [stderr] Checking rand v0.9.4 [INFO] [stderr] Checking phf v0.12.1 [INFO] [stderr] Compiling pest_derive v2.8.6 [INFO] [stderr] Checking succparen v0.0.3 [INFO] [stderr] Checking rand v0.8.6 [INFO] [stderr] Checking emojis v0.7.2 [INFO] [stderr] Checking clap v4.6.1 [INFO] [stderr] Checking rand_distr v0.5.1 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking bson v2.15.0 [INFO] [stderr] Checking cauchy v0.4.0 [INFO] [stderr] Checking ndarray v0.17.2 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking mmap-rs v0.7.0 [INFO] [stderr] Checking lax v0.18.1 [INFO] [stderr] Checking lax v0.17.0 [INFO] [stderr] Checking newick v0.11.0 [INFO] [stderr] Checking hnsw_rs v0.3.4 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking nalgebra v0.33.3 [INFO] [stderr] Checking sprs v0.11.4 [INFO] [stderr] Checking dartunifrac v0.3.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: fields `node_name` and `is_leaf` are never read [INFO] [stdout] --> src/emdunifrac.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 34 | struct TreeIndex { [INFO] [stdout] | --------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 39 | node_name: Vec>, // postorder node -> name [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] 40 | is_leaf: Vec, // postorder node -> compact leaf? [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TreeIndex` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `node_name` and `is_leaf` are never read [INFO] [stdout] --> src/emdunifrac.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 34 | struct TreeIndex { [INFO] [stdout] | --------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 39 | node_name: Vec>, // postorder node -> name [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] 40 | is_leaf: Vec, // postorder node -> compact leaf? [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TreeIndex` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 56s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db", kill_on_drop: false }` [INFO] [stdout] a609ff3b2f7935f5e8026933751f3deb8351b2c47d57f0f2f7ca77888d0db5db