[INFO] cloning repository https://github.com/keithyin/bam2ab1
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/bam2ab1" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fbam2ab1", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fbam2ab1'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8a37df29af31ac313c92844e479140c7a51044a3
[INFO] checking keithyin/bam2ab1 against c999cef531ea9059e189e82fe0e82c5daf249bc9 for pr-160904
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fbam2ab1" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/keithyin/bam2ab1
[INFO] finished tweaking git repo https://github.com/keithyin/bam2ab1
[INFO] tweaked toml for git repo https://github.com/keithyin/bam2ab1 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/keithyin/bam2ab1 on toolchain c999cef531ea9059e189e82fe0e82c5daf249bc9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c999cef531ea9059e189e82fe0e82c5daf249bc9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/keithyin/bam2ab1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c999cef531ea9059e189e82fe0e82c5daf249bc9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded toml_datetime v0.7.1
[INFO] [stderr]   Downloaded gskits v0.15.15
[INFO] [stderr]   Downloaded windows-core v0.62.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]   Downloaded petgraph v0.8.2
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.2+3.5.2
[INFO] [stderr]   Downloaded na_seq v0.3.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d
[INFO] running `Command { std: "docker" "start" "4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d" "/opt/rustwide/cargo-home/bin/cargo" "+c999cef531ea9059e189e82fe0e82c5daf249bc9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d" "/opt/rustwide/cargo-home/bin/cargo" "+c999cef531ea9059e189e82fe0e82c5daf249bc9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.19
[INFO] [stderr]    Compiling find-msvc-tools v0.1.1
[INFO] [stderr]    Compiling serde_core v1.0.225
[INFO] [stderr]    Compiling serde v1.0.225
[INFO] [stderr]     Checking cfg-if v1.0.3
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling libc v0.2.175
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]     Checking num-traits v0.2.19
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking getrandom v0.2.16
[INFO] [stderr]    Compiling libloading v0.8.8
[INFO] [stderr]     Checking bytemuck v1.23.2
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling hashbrown v0.15.5
[INFO] [stderr]    Compiling winnow v0.7.13
[INFO] [stderr]    Compiling bitflags v2.9.4
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling toml_datetime v0.7.1
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling thiserror v2.0.16
[INFO] [stderr]    Compiling portable-atomic v1.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]    Compiling anyhow v1.0.99
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking indexmap v2.11.3
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling cc v1.2.37
[INFO] [stderr]     Checking csv-core v0.1.12
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling virtue v0.0.18
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking unicode-width v0.2.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking console v0.15.11
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking petgraph v0.8.2
[INFO] [stderr]     Checking regex-automata v0.4.10
[INFO] [stderr]    Compiling openssl-src v300.5.2+3.5.2
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling toml_parser v1.0.2
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]    Compiling bincode_derive v2.0.1
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking ordered-float v5.0.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking unty v0.0.4
[INFO] [stderr]    Compiling toml_edit v0.23.5
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking iana-time-zone v0.1.64
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking time v0.3.47
[INFO] [stderr]     Checking bincode v2.0.1
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]     Checking clap_builder v4.5.48
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking indicatif v0.17.11
[INFO] [stderr]    Compiling openssl-sys v0.9.109
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr] error: could not compile `clang-sys` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/c999cef531ea9059e189e82fe0e82c5daf249bc9/bin/rustc --crate-name clang_sys --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/clang-sys-1.8.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat,unused-externs-silent --crate-type lib --emit=dep-info,metadata,link -Z embed-metadata=no -C embed-bitcode=no --cfg 'feature="clang_3_5"' --cfg 'feature="clang_3_6"' --cfg 'feature="clang_3_7"' --cfg 'feature="clang_3_8"' --cfg 'feature="clang_3_9"' --cfg 'feature="clang_4_0"' --cfg 'feature="clang_5_0"' --cfg 'feature="clang_6_0"' --cfg 'feature="libloading"' --cfg 'feature="runtime"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clang_10_0", "clang_11_0", "clang_12_0", "clang_13_0", "clang_14_0", "clang_15_0", "clang_16_0", "clang_17_0", "clang_18_0", "clang_3_5", "clang_3_6", "clang_3_7", "clang_3_8", "clang_3_9", "clang_4_0", "clang_5_0", "clang_6_0", "clang_7_0", "clang_8_0", "clang_9_0", "libcpp", "libloading", "runtime", "static"))' -C metadata=bb2a881ca1bf3c84 -C extra-filename=-50162c1bdc101363 --out-dir /opt/rustwide/target/debug/build/clang-sys/50162c1bdc101363/out -L dependency=/opt/rustwide/target/debug/build/cfg-if/5358a2b3941d2e22/out --extern glob=/opt/rustwide/target/debug/build/glob/2a70d14a7a68e908/out/libglob-2a70d14a7a68e908.rmeta --extern libc=/opt/rustwide/target/debug/build/libc/666804e4efaf6f44/out/liblibc-666804e4efaf6f44.rmeta --extern libloading=/opt/rustwide/target/debug/build/libloading/2806890788a427a1/out/liblibloading-2806890788a427a1.rmeta --cap-lints allow --cap-lints=forbid --force-warn=unused_crate_dependencies` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d", kill_on_drop: false }`
[INFO] [stdout] 4282b9e4eb83cfccddbc3864ea49727e4a0e42fca0b9fe2e1e31dbc6d5e0ed0d
