[INFO] cloning repository https://github.com/cmdcolin/vcfverifier
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/cmdcolin/vcfverifier" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5efec12c61c8d7cdac156253410a99ef49865e8f
[INFO] checking cmdcolin/vcfverifier against c999cef531ea9059e189e82fe0e82c5daf249bc9 for pr-160904
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcmdcolin%2Fvcfverifier" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] finished tweaking git repo https://github.com/cmdcolin/vcfverifier
[INFO] tweaked toml for git repo https://github.com/cmdcolin/vcfverifier written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/cmdcolin/vcfverifier on toolchain c999cef531ea9059e189e82fe0e82c5daf249bc9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c999cef531ea9059e189e82fe0e82c5daf249bc9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/cmdcolin/vcfverifier already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c999cef531ea9059e189e82fe0e82c5daf249bc9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rust-htslib v1.0.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded faimm v0.5.1
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2
[INFO] running `Command { std: "docker" "start" "3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2" "/opt/rustwide/cargo-home/bin/cargo" "+c999cef531ea9059e189e82fe0e82c5daf249bc9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2" "/opt/rustwide/cargo-home/bin/cargo" "+c999cef531ea9059e189e82fe0e82c5daf249bc9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking idna_adapter v1.2.2
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling cc v1.2.61
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]     Checking memmap2 v0.9.10
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking faimm v0.5.1
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling openssl-src v300.6.0+3.6.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling openssl-sys v0.9.114
[INFO] [stderr]    Compiling curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling hts-sys v2.2.0
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2", kill_on_drop: false }`
[INFO] [stdout] 3541e0129abd12c47d830efca59dc7fc529eeac3b743989afb3f839e399f76a2
