[INFO] cloning repository https://github.com/PaznerA/gene-sim
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/PaznerA/gene-sim" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPaznerA%2Fgene-sim", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPaznerA%2Fgene-sim'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 794f5a050f2bec9bdb6ea419cd0335214fe1ad88
[INFO] checking PaznerA/gene-sim against f4dd856795debe636f2ba39a900f162f5abeb7e8 for pr-160904
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPaznerA%2Fgene-sim" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-1-tc2/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/PaznerA/gene-sim
[INFO] finished tweaking git repo https://github.com/PaznerA/gene-sim
[INFO] tweaked toml for git repo https://github.com/PaznerA/gene-sim written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/PaznerA/gene-sim on toolchain f4dd856795debe636f2ba39a900f162f5abeb7e8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f4dd856795debe636f2ba39a900f162f5abeb7e8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/PaznerA/gene-sim already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f4dd856795debe636f2ba39a900f162f5abeb7e8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: unused field `repository` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:40:1
[INFO] [stderr]    |
[INFO] [stderr] 40 | repository = "local"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_package_fields` is set to `warn` by default
[INFO] [stderr] help: consider removing the field `workspace.package.repository`
[INFO] [stderr] warning: workspace (manifest) generated 1 warning
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378
[INFO] running `Command { std: "docker" "start" "10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378" "/opt/rustwide/cargo-home/bin/cargo" "+f4dd856795debe636f2ba39a900f162f5abeb7e8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378" "/opt/rustwide/cargo-home/bin/cargo" "+f4dd856795debe636f2ba39a900f162f5abeb7e8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: unused field `repository` in `workspace.package`
[INFO] [stderr]   --> Cargo.toml:40:1
[INFO] [stderr]    |
[INFO] [stderr] 40 | repository = "local"
[INFO] [stderr]    | ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_workspace_package_fields` is set to `warn` by default
[INFO] [stderr] help: consider removing the field `workspace.package.repository`
[INFO] [stderr] warning: workspace (manifest) generated 1 warning
[INFO] [stderr]     Checking futures-core v0.3.32
[INFO] [stderr]     Checking bitflags v2.13.0
[INFO] [stderr]     Checking serde_json v1.0.150
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling zerocopy-derive v0.8.52
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]    Compiling bevy_macro_utils v0.19.0
[INFO] [stderr]     Checking foldhash v0.2.0
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking spin v0.10.0
[INFO] [stderr]    Compiling derive_more-impl v2.1.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling erased-serde v0.4.10
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]     Checking futures-lite v2.6.1
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking disqualified v1.0.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling bevy_ecs_macro_logic v0.19.0
[INFO] [stderr]    Compiling bevy_reflect_derive v0.19.0
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking rand v0.9.4
[INFO] [stderr]     Checking rand_xorshift v0.4.0
[INFO] [stderr]    Compiling assert_type_match v0.1.1
[INFO] [stderr]     Checking crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling variadics_please v1.1.0
[INFO] [stderr]     Checking bevy_ptr v0.19.0
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking genome v0.1.0 (/opt/rustwide/workdir/crates/genome)
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking downcast-rs v2.0.2
[INFO] [stderr]     Checking smallvec v1.15.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]     Checking bumpalo v3.20.3
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking arrayvec v0.7.6
[INFO] [stderr]     Checking nonmax v0.5.5
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking bevy_platform v0.19.0
[INFO] [stderr]     Checking async-executor v1.14.0
[INFO] [stderr]    Compiling bevy_ecs_macros v0.19.0
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking bevy_utils v0.19.0
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking bit-set v0.10.0
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking zerocopy v0.8.52
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]    Compiling getset v0.1.7
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.3.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking strum v0.28.0
[INFO] [stderr]     Checking ron v0.12.1
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking discovery v0.1.0 (/opt/rustwide/workdir/crates/discovery)
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking gif v0.13.3
[INFO] [stderr]    Compiling cc v1.2.65
[INFO] [stderr]     Checking rusty-fork v0.3.1
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking criterion-plot v0.8.2
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking page_size v0.6.0
[INFO] [stderr]     Checking oracle-slim v0.1.0 (/opt/rustwide/workdir/crates/oracle-slim)
[INFO] [stderr]     Checking sbol v0.1.0 (/opt/rustwide/workdir/crates/sbol)
[INFO] [stderr]     Checking regex v1.12.4
[INFO] [stderr]     Checking relations-index v0.1.0 (/opt/rustwide/workdir/crates/relations-index)
[INFO] [stderr]     Checking oracle-fba v0.1.0 (/opt/rustwide/workdir/crates/oracle-fba)
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling alloca v0.4.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking derive_more v2.1.1
[INFO] [stderr]     Checking bevy_tasks v0.19.0
[INFO] [stderr]     Checking bevy_reflect v0.19.0
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking bevy_ecs v0.19.0
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.10.0
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking proptest v1.11.0
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]     Checking criterion v0.8.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v4.0.0
[INFO] [stderr]     Checking crispr v0.1.0 (/opt/rustwide/workdir/crates/crispr)
[INFO] [stderr]     Checking sim-core v0.1.0 (/opt/rustwide/workdir/crates/sim-core)
[INFO] [stderr]     Checking harness v0.1.0 (/opt/rustwide/workdir/crates/harness)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 51.63s
[INFO] running `Command { std: "docker" "inspect" "10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378", kill_on_drop: false }`
[INFO] [stdout] 10cda9b11dc1be13f3bdf96b743eb98e2767ffc6c75a140a4c1f17cd6311b378
