[INFO] cloning repository https://github.com/earth-metabolome-initiative/npc-smarts [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/earth-metabolome-initiative/npc-smarts" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fnpc-smarts", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fnpc-smarts'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 2e4db29ab2c5c9cc781a18b5c1997c9ab92d1f7f [INFO] checking earth-metabolome-initiative/npc-smarts against c0dfa9ae292642b7683cf7162ffb6880170df098 for pr-160902 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fnpc-smarts" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/earth-metabolome-initiative/npc-smarts [INFO] finished tweaking git repo https://github.com/earth-metabolome-initiative/npc-smarts [INFO] tweaked toml for git repo https://github.com/earth-metabolome-initiative/npc-smarts written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/earth-metabolome-initiative/npc-smarts on toolchain c0dfa9ae292642b7683cf7162ffb6880170df098 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c0dfa9ae292642b7683cf7162ffb6880170df098" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/earth-metabolome-initiative/npc-smarts already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c0dfa9ae292642b7683cf7162ffb6880170df098" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7 [INFO] running `Command { std: "docker" "start" "c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7" "/opt/rustwide/cargo-home/bin/cargo" "+c0dfa9ae292642b7683cf7162ffb6880170df098" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7" "/opt/rustwide/cargo-home/bin/cargo" "+c0dfa9ae292642b7683cf7162ffb6880170df098" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Checking bitflags v2.11.1 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Checking log v0.4.30 [INFO] [stderr] Checking foldhash v0.2.0 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Checking linux-raw-sys v0.12.1 [INFO] [stderr] Compiling zerocopy v0.8.50 [INFO] [stderr] Checking mio v1.2.1 [INFO] [stderr] Checking either v1.16.0 [INFO] [stderr] Checking rustc-std-workspace-alloc v1.0.1 [INFO] [stderr] Checking unicode-width v0.2.2 [INFO] [stderr] Checking hashbrown v0.17.1 [INFO] [stderr] Checking hashbrown v0.16.1 [INFO] [stderr] Checking rustls-pki-types v1.14.1 [INFO] [stderr] Checking http v1.4.1 [INFO] [stderr] Checking castaway v0.2.4 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking slab v0.4.12 [INFO] [stderr] Compiling unicode-segmentation v1.13.3 [INFO] [stderr] Compiling radium v0.7.0 [INFO] [stderr] Compiling rustls v0.23.40 [INFO] [stderr] Compiling indoc v2.0.7 [INFO] [stderr] Checking http-body v1.0.1 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling instability v0.3.12 [INFO] [stderr] Compiling convert_case v0.10.0 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Checking compact_str v0.9.1 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Checking lru v0.16.4 [INFO] [stderr] Checking parking_lot_core v0.9.12 [INFO] [stderr] Checking rustls-webpki v0.103.13 [INFO] [stderr] Compiling semver v1.0.28 [INFO] [stderr] Checking cpufeatures v0.3.0 [INFO] [stderr] Checking tap v1.0.1 [INFO] [stderr] Checking chacha20 v0.10.0 [INFO] [stderr] Checking unicode-truncate v2.0.1 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Checking wyz v0.5.1 [INFO] [stderr] Checking hybrid-array v0.4.12 [INFO] [stderr] Checking parking_lot v0.12.5 [INFO] [stderr] Checking tracing-core v0.1.36 [INFO] [stderr] Checking maybe-dangling v0.1.2 [INFO] [stderr] Compiling litrs v1.0.0 [INFO] [stderr] Compiling getrandom v0.4.2 [INFO] [stderr] Checking arrow-schema v58.3.0 [INFO] [stderr] Checking funty v2.0.0 [INFO] [stderr] Checking aliasable v0.1.3 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Checking stable_try_trait_v2 v1.75.1 [INFO] [stderr] Checking lender v0.6.2 [INFO] [stderr] Compiling document-features v0.2.12 [INFO] [stderr] Checking bitvec v1.0.1 [INFO] [stderr] Checking time v0.3.47 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling darling_core v0.23.0 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking signal-hook-mio v0.2.5 [INFO] [stderr] Compiling flatbuffers v25.12.19 [INFO] [stderr] Checking rand v0.10.1 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking line-clipping v0.3.7 [INFO] [stderr] Compiling unicase v2.9.0 [INFO] [stderr] Compiling portable-atomic v1.13.1 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling serde_json v1.0.150 [INFO] [stderr] Compiling mime_guess v2.0.5 [INFO] [stderr] Checking rustls-native-certs v0.8.4 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Compiling zerofrom-derive v0.1.7 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling yoke-derive v0.8.2 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling zerovec-derive v0.11.3 [INFO] [stderr] Compiling displaydoc v0.2.6 [INFO] [stderr] Compiling tokio-macros v2.7.0 [INFO] [stderr] Compiling zerocopy-derive v0.8.50 [INFO] [stderr] Checking zerofrom v0.1.8 [INFO] [stderr] Compiling strum_macros v0.27.2 [INFO] [stderr] Checking yoke v0.8.2 [INFO] [stderr] Checking thiserror v2.0.18 [INFO] [stderr] Compiling futures-macro v0.3.32 [INFO] [stderr] Checking tokio v1.52.3 [INFO] [stderr] Checking zerovec v0.11.6 [INFO] [stderr] Checking zerotrie v0.2.4 [INFO] [stderr] Compiling darling_macro v0.23.0 [INFO] [stderr] Checking tinystr v0.8.3 [INFO] [stderr] Checking potential_utf v0.1.5 [INFO] [stderr] Checking icu_locale_core v2.2.0 [INFO] [stderr] Checking icu_collections v2.2.0 [INFO] [stderr] Checking futures-util v0.3.32 [INFO] [stderr] Compiling darling v0.23.0 [INFO] [stderr] Checking kasuari v0.4.12 [INFO] [stderr] Compiling strum_macros v0.28.0 [INFO] [stderr] Checking icu_provider v2.2.0 [INFO] [stderr] Checking icu_properties v2.2.0 [INFO] [stderr] Checking icu_normalizer v2.2.0 [INFO] [stderr] Checking idna_adapter v1.2.2 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Compiling derive_more-impl v2.1.1 [INFO] [stderr] Checking derive_more v2.1.1 [INFO] [stderr] Checking strum v0.27.2 [INFO] [stderr] Checking multi_ranged v0.1.2 [INFO] [stderr] Checking strum v0.28.0 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking crossterm v0.29.0 [INFO] [stderr] Checking ratatui-core v0.1.0 [INFO] [stderr] Checking hyper v1.10.1 [INFO] [stderr] Checking tower v0.5.3 [INFO] [stderr] Checking geometric-traits v0.1.0 (https://github.com/earth-metabolome-initiative/geometric-traits?branch=main#0178cb47) [INFO] [stderr] Checking half v2.7.1 [INFO] [stderr] Checking chrono v0.4.44 [INFO] [stderr] Checking elements_rs v0.2.7 [INFO] [stderr] Checking arrow-buffer v58.3.0 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Checking hyper-util v0.1.20 [INFO] [stderr] Checking ratatui-widgets v0.3.0 [INFO] [stderr] Checking tokio-rustls v0.26.4 [INFO] [stderr] Checking arrow-data v58.3.0 [INFO] [stderr] Checking gethostname v1.1.0 [INFO] [stderr] Checking crypto-common v0.2.2 [INFO] [stderr] Checking block-buffer v0.12.0 [INFO] [stderr] Checking const-oid v0.10.2 [INFO] [stderr] Checking arrow-array v58.3.0 [INFO] [stderr] Checking memchr v2.8.1 [INFO] [stderr] Checking x11rb-protocol v0.13.2 [INFO] [stderr] Checking ratatui-macros v0.7.0 [INFO] [stderr] Checking hyper-rustls v0.27.9 [INFO] [stderr] Checking tokio-util v0.7.18 [INFO] [stderr] Checking digest v0.11.3 [INFO] [stderr] Checking tower-http v0.6.11 [INFO] [stderr] Checking ratatui-crossterm v0.1.0 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking rayon-core v1.13.0 [INFO] [stderr] Checking rustls-platform-verifier v0.7.0 [INFO] [stderr] Checking http-body-util v0.1.3 [INFO] [stderr] Checking ordered-float v2.10.1 [INFO] [stderr] Checking console v0.16.3 [INFO] [stderr] Checking integer-encoding v3.0.4 [INFO] [stderr] Checking unit-prefix v0.5.2 [INFO] [stderr] Checking thrift v0.17.0 [INFO] [stderr] Checking arrow-select v58.3.0 [INFO] [stderr] Checking indicatif v0.18.4 [INFO] [stderr] Checking tempfile v3.27.0 [INFO] [stderr] Checking reqwest v0.13.4 [INFO] [stderr] Checking rayon v1.12.0 [INFO] [stderr] Checking ratatui v0.30.0 [INFO] [stderr] Checking md-5 v0.11.0 [INFO] [stderr] Checking client-uploader-traits v0.1.0 [INFO] [stderr] Checking tokio-stream v0.1.18 [INFO] [stderr] Checking arrow-ipc v58.3.0 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Checking secrecy v0.10.3 [INFO] [stderr] Checking twox-hash v2.1.2 [INFO] [stderr] Checking x11rb v0.13.2 [INFO] [stderr] Compiling seq-macro v0.3.6 [INFO] [stderr] Checking zenodo-rs v0.1.7 [INFO] [stderr] Checking arboard v3.6.1 [INFO] [stderr] Checking indexmap v2.14.0 [INFO] [stderr] Checking clap v4.6.1 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking parquet v58.3.0 [INFO] [stderr] Checking molecular-formulas v0.1.10 [INFO] [stderr] Checking smiles-parser v0.1.0 (https://github.com/earth-metabolome-initiative/smiles-parser?branch=main#ba32bd63) [INFO] [stderr] Checking smarts-rs v0.1.0 (https://github.com/earth-metabolome-initiative/smarts-rs?branch=main#b94c942c) [INFO] [stderr] Checking smarts-evolution v0.1.0 (https://github.com/earth-metabolome-initiative/smarts-evolution?branch=main#03bba8d3) [INFO] [stderr] Checking chemtax-smarts v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 21.74s [INFO] running `Command { std: "docker" "inspect" "c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7", kill_on_drop: false }` [INFO] [stdout] c24e4aec9e563ae874a290ffabe74924339d166fe1bc756f2fb040b29c735cd7