[INFO] cloning repository https://github.com/30be/scaffolding-lna-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/30be/scaffolding-lna-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F30be%2Fscaffolding-lna-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F30be%2Fscaffolding-lna-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 22427a9f064f9c60fd6090ca46bef07c17000c53 [INFO] checking 30be/scaffolding-lna-rs against c0dfa9ae292642b7683cf7162ffb6880170df098 for pr-160902 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F30be%2Fscaffolding-lna-rs" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/30be/scaffolding-lna-rs [INFO] finished tweaking git repo https://github.com/30be/scaffolding-lna-rs [INFO] tweaked toml for git repo https://github.com/30be/scaffolding-lna-rs written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/30be/scaffolding-lna-rs on toolchain c0dfa9ae292642b7683cf7162ffb6880170df098 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c0dfa9ae292642b7683cf7162ffb6880170df098" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/30be/scaffolding-lna-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c0dfa9ae292642b7683cf7162ffb6880170df098" "fetch" 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false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7d36dd476548067082d63ca0594759c9540f670466720fe0458654f071342e5c" "/opt/rustwide/cargo-home/bin/cargo" "+c0dfa9ae292642b7683cf7162ffb6880170df098" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7d36dd476548067082d63ca0594759c9540f670466720fe0458654f071342e5c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7d36dd476548067082d63ca0594759c9540f670466720fe0458654f071342e5c" "/opt/rustwide/cargo-home/bin/cargo" "+c0dfa9ae292642b7683cf7162ffb6880170df098" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Checking cfg-if v1.0.4 [INFO] [stderr] Compiling libc v0.2.180 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling find-msvc-tools v0.1.9 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Checking memchr v2.7.6 [INFO] [stderr] Checking simd-adler32 v0.3.8 [INFO] [stderr] Compiling libm v0.2.16 [INFO] [stderr] Checking log v0.4.29 [INFO] [stderr] Compiling semver v1.0.27 [INFO] [stderr] Checking adler2 v2.0.1 [INFO] [stderr] Compiling unicode-ident v1.0.22 [INFO] [stderr] Compiling quote v1.0.44 [INFO] 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v1.11.0 [INFO] [stderr] Checking uuid v1.20.0 [INFO] [stderr] Checking ureq-proto v0.5.3 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Checking plotters-bitmap v0.3.7 [INFO] [stderr] Checking env_filter v0.1.4 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking tempfile v3.24.0 [INFO] [stderr] Checking plotters v0.3.7 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking env_logger v0.11.8 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Checking clap v4.5.56 [INFO] [stderr] Checking rustls-webpki v0.103.9 [INFO] [stderr] Checking rand_distr v0.5.1 [INFO] [stderr] Checking ureq v3.1.4 [INFO] [stderr] Checking rusqlite v0.38.0 [INFO] [stderr] Checking scaffolding-lna-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::fmt` [INFO] [stdout] --> src/pdb.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::fmt; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::str::FromStr` [INFO] [stdout] --> src/pdb.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std::str::FromStr; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fmt` [INFO] [stdout] --> src/pdb.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::fmt; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::str::FromStr` [INFO] [stdout] --> src/pdb.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std::str::FromStr; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/db.rs:99:13 [INFO] [stdout] | [INFO] [stdout] 99 | let mut db = Db::open_in_memory().unwrap(); [INFO] [stdout] | ----^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/pdb.rs:127:13 [INFO] [stdout] | [INFO] [stdout] 127 | let mut chain_atoms: Vec<&Atom> = self.atoms.iter() [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/pdb.rs:127:13 [INFO] [stdout] | [INFO] [stdout] 127 | let mut chain_atoms: Vec<&Atom> = self.atoms.iter() [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chain_id` [INFO] [stdout] --> src/pdb.rs:156:14 [INFO] [stdout] | [INFO] [stdout] 156 | for (chain_id, atoms) in chains { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chain_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chain_id` [INFO] [stdout] --> src/pdb.rs:156:14 [INFO] [stdout] | [INFO] [stdout] 156 | for (chain_id, atoms) in chains { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chain_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `draw_resolution_vs_score` is never used [INFO] [stdout] --> src/bin/make_plots.rs:246:4 [INFO] [stdout] | [INFO] [stdout] 246 | fn draw_resolution_vs_score(out_path: &str) -> Result<(), Box> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `draw_species_bar_chart` is never used [INFO] [stdout] --> src/bin/make_plots.rs:275:4 [INFO] [stdout] | [INFO] [stdout] 275 | fn draw_species_bar_chart(out_path: &str) -> Result<(), Box> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `draw_ramachandran_heatmap` is never used [INFO] [stdout] --> src/bin/make_plots.rs:314:4 [INFO] [stdout] | [INFO] [stdout] 314 | fn draw_ramachandran_heatmap(out_path: &str) -> Result<(), Box> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `draw_resolution_vs_score` is never used [INFO] [stdout] --> src/bin/make_plots.rs:246:4 [INFO] [stdout] | [INFO] [stdout] 246 | fn draw_resolution_vs_score(out_path: &str) -> Result<(), Box> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `draw_species_bar_chart` is never used [INFO] [stdout] --> src/bin/make_plots.rs:275:4 [INFO] [stdout] | [INFO] [stdout] 275 | fn draw_species_bar_chart(out_path: &str) -> Result<(), Box> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `draw_ramachandran_heatmap` is never used [INFO] [stdout] --> src/bin/make_plots.rs:314:4 [INFO] [stdout] | [INFO] [stdout] 314 | fn draw_ramachandran_heatmap(out_path: &str) -> Result<(), Box> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + 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