[INFO] fetching crate primer_demux 0.0.4...
[INFO] checking primer_demux-0.0.4 against 36e0a7eac2392bdd51fab6e7ff1d8c0e42d33bf6 for pr-160581
[INFO] extracting crate primer_demux 0.0.4 into /workspace/builds/worker-4-tc2/source
[INFO] started tweaking crates.io crate primer_demux 0.0.4
[INFO] finished tweaking crates.io crate primer_demux 0.0.4
[INFO] tweaked toml for crates.io crate primer_demux 0.0.4 written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate primer_demux 0.0.4 on toolchain 36e0a7eac2392bdd51fab6e7ff1d8c0e42d33bf6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+36e0a7eac2392bdd51fab6e7ff1d8c0e42d33bf6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate primer_demux 0.0.4 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+36e0a7eac2392bdd51fab6e7ff1d8c0e42d33bf6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stdout] e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634
[INFO] running `Command { std: "docker" "start" "e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634" "/opt/rustwide/cargo-home/bin/cargo" "+36e0a7eac2392bdd51fab6e7ff1d8c0e42d33bf6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634" "/opt/rustwide/cargo-home/bin/cargo" "+36e0a7eac2392bdd51fab6e7ff1d8c0e42d33bf6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]     Checking primer_demux v0.0.4 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `PrimerCandidate`
[INFO] [stdout]  --> src/get_demuxed_reads.rs:2:27
[INFO] [stdout]   |
[INFO] [stdout] 2 | use crate::core_context::{PrimerCandidate, PrimerPair};
[INFO] [stdout]   |                           ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ops::Deref` and `path::Path`
[INFO] [stdout]   --> src/get_demuxed_reads.rs:11:11
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::{ops::Deref, path::Path};
[INFO] [stdout]    |           ^^^^^^^^^^  ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v1.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `tracing::info`
[INFO] [stdout]   --> src/demux_pipeline_v1.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use tracing::info;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `MayersPattern`
[INFO] [stdout]  --> src/demux_primer.rs:2:62
[INFO] [stdout]   |
[INFO] [stdout] 2 | use crate::primer_myers::{get_myers_from_primers, Direction, MayersPattern};
[INFO] [stdout]   |                                                              ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `counter` and `histogram`
[INFO] [stdout]   --> src/demux_primer.rs:10:21
[INFO] [stdout]    |
[INFO] [stdout] 10 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                     ^^^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `debug`, `info`, and `level_filters`
[INFO] [stdout]   --> src/demux_primer.rs:14:15
[INFO] [stdout]    |
[INFO] [stdout] 14 | use tracing::{debug, info, level_filters};
[INFO] [stdout]    |               ^^^^^  ^^^^  ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `flush_sink`
[INFO] [stdout]  --> src/writer_worker.rs:3:23
[INFO] [stdout]   |
[INFO] [stdout] 3 | use crate::io_utils::{flush_sink, make_writers, open_line_sink, LineSink};
[INFO] [stdout]   |                       ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `PrimerCandidate`
[INFO] [stdout]  --> src/get_demuxed_reads.rs:2:27
[INFO] [stdout]   |
[INFO] [stdout] 2 | use crate::core_context::{PrimerCandidate, PrimerPair};
[INFO] [stdout]   |                           ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ops::Deref` and `path::Path`
[INFO] [stdout]   --> src/get_demuxed_reads.rs:11:11
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::{ops::Deref, path::Path};
[INFO] [stdout]    |           ^^^^^^^^^^  ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v1.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `tracing::info`
[INFO] [stdout]   --> src/demux_pipeline_v1.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use tracing::info;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `MayersPattern`
[INFO] [stdout]  --> src/demux_primer.rs:2:62
[INFO] [stdout]   |
[INFO] [stdout] 2 | use crate::primer_myers::{get_myers_from_primers, Direction, MayersPattern};
[INFO] [stdout]   |                                                              ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `counter` and `histogram`
[INFO] [stdout]   --> src/demux_primer.rs:10:21
[INFO] [stdout]    |
[INFO] [stdout] 10 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                     ^^^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `debug`, `info`, and `level_filters`
[INFO] [stdout]   --> src/demux_primer.rs:14:15
[INFO] [stdout]    |
[INFO] [stdout] 14 | use tracing::{debug, info, level_filters};
[INFO] [stdout]    |               ^^^^^  ^^^^  ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `flush_sink`
[INFO] [stdout]  --> src/writer_worker.rs:3:23
[INFO] [stdout]   |
[INFO] [stdout] 3 | use crate::io_utils::{flush_sink, make_writers, open_line_sink, LineSink};
[INFO] [stdout]   |                       ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `output_file`
[INFO] [stdout]   --> src/get_demuxed_reads.rs:55:5
[INFO] [stdout]    |
[INFO] [stdout] 55 |     output_file: &str,
[INFO] [stdout]    |     ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_output_file`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `output_file`
[INFO] [stdout]   --> src/get_demuxed_reads.rs:55:5
[INFO] [stdout]    |
[INFO] [stdout] 55 |     output_file: &str,
[INFO] [stdout]    |     ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_output_file`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `left_move_step` is never read
[INFO] [stdout]    --> src/primer_demuxer_v1.rs:97:38
[INFO] [stdout]     |
[INFO] [stdout]  97 |             let mut left_move_step = 0;
[INFO] [stdout]     |                                      ^ this value is reassigned later and never used
[INFO] [stdout] ...
[INFO] [stdout] 102 |                 (left_move_step, right_move_step) = primer_pair_status(
[INFO] [stdout]     |                  -------------- `left_move_step` is overwritten here before the previous value is read
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `nn` is never read
[INFO] [stdout]   --> src/bam_record_extention.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout]  5 | pub struct ReadRecord {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub nn: Option<Vec<u8>>,
[INFO] [stdout]    |         ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ReadRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `u32` is never used
[INFO] [stdout]   --> src/bam_record_extention.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 45 | pub trait AuxExt<'a> {
[INFO] [stdout]    |           ------ method in this trait
[INFO] [stdout] 46 |     fn i32(&self, tag: &[u8]) -> Option<i32>; // ch:i, cx:i …
[INFO] [stdout] 47 |     fn u32(&self, tag: &[u8]) -> Option<u32>; // np:i, cx:i …
[INFO] [stdout]    |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `slice_seq_qual` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:424:4
[INFO] [stdout]     |
[INFO] [stdout] 424 | fn slice_seq_qual<'a>(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `finish` is never used
[INFO] [stdout]    --> src/io_utils.rs:137:8
[INFO] [stdout]     |
[INFO] [stdout] 131 | pub trait ReadWriter {
[INFO] [stdout]     |           ---------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 137 |     fn finish(&mut self) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `inner` is never read
[INFO] [stdout]    --> src/io_utils.rs:361:9
[INFO] [stdout]     |
[INFO] [stdout] 360 |     Jsonl {
[INFO] [stdout]     |     ----- field in this variant
[INFO] [stdout] 361 |         inner: BufWriter<File>,
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `inner` and `wrote_header` are never read
[INFO] [stdout]    --> src/io_utils.rs:364:9
[INFO] [stdout]     |
[INFO] [stdout] 363 |     Tsv {
[INFO] [stdout]     |     --- fields in this variant
[INFO] [stdout] 364 |         inner: BufWriter<File>,
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout] 365 |         wrote_header: bool,
[INFO] [stdout]     |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_header_if_needed` is never used
[INFO] [stdout]    --> src/io_utils.rs:382:4
[INFO] [stdout]     |
[INFO] [stdout] 382 | fn write_header_if_needed(sink: &mut LineSink) -> io::Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `CompactRec` is never constructed
[INFO] [stdout]    --> src/io_utils.rs:397:12
[INFO] [stdout]     |
[INFO] [stdout] 397 | pub struct CompactRec {
[INFO] [stdout]     |            ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `to_compact_rec` is never used
[INFO] [stdout]    --> src/io_utils.rs:404:8
[INFO] [stdout]     |
[INFO] [stdout] 404 | pub fn to_compact_rec(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_record` is never used
[INFO] [stdout]    --> src/io_utils.rs:421:8
[INFO] [stdout]     |
[INFO] [stdout] 421 | pub fn write_record(sink: &mut LineSink, rec: &CompactRec) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `flush_sink` is never used
[INFO] [stdout]    --> src/io_utils.rs:439:8
[INFO] [stdout]     |
[INFO] [stdout] 439 | pub fn flush_sink(sink: &mut LineSink) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_bar_pb` is never used
[INFO] [stdout]  --> src/pbar.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn get_bar_pb(message: String, interval: Duration, total: u64) -> ProgressBar {
[INFO] [stdout]   |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `distance` and `single_end` are never read
[INFO] [stdout]   --> src/core_context.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub struct PrimerPair {
[INFO] [stdout]    |            ---------- fields in this struct
[INFO] [stdout] 16 |     pub primer_id: String,
[INFO] [stdout] 17 |     pub distance: (i32, i32),
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub single_end: bool,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PrimerPair` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `PrimerMeta` is never constructed
[INFO] [stdout]   --> src/core_context.rs:32:12
[INFO] [stdout]    |
[INFO] [stdout] 32 | pub struct PrimerMeta {
[INFO] [stdout]    |            ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Annotated` is never constructed
[INFO] [stdout]   --> src/core_context.rs:40:12
[INFO] [stdout]    |
[INFO] [stdout] 40 | pub struct Annotated<T> {
[INFO] [stdout]    |            ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `pattern` is never read
[INFO] [stdout]   --> src/primer_myers.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 |     MyersLong {
[INFO] [stdout]    |     --------- field in this variant
[INFO] [stdout] 16 |         myers: MyersLong<u8>,
[INFO] [stdout] 17 |         pattern: String,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `pattern` is never used
[INFO] [stdout]   --> src/primer_myers.rs:23:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl MayersPattern {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] 22 |     #[inline]
[INFO] [stdout] 23 |     pub fn pattern(&self) -> &str {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `RG` should have a snake case name
[INFO] [stdout]   --> src/bam_record_extention.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub RG: Option<String>,
[INFO] [stdout]    |         ^^ help: convert the identifier to snake case: `rg`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `left_move_step` is never read
[INFO] [stdout]    --> src/primer_demuxer_v1.rs:97:38
[INFO] [stdout]     |
[INFO] [stdout]  97 |             let mut left_move_step = 0;
[INFO] [stdout]     |                                      ^ this value is reassigned later and never used
[INFO] [stdout] ...
[INFO] [stdout] 102 |                 (left_move_step, right_move_step) = primer_pair_status(
[INFO] [stdout]     |                  -------------- `left_move_step` is overwritten here before the previous value is read
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `nn` is never read
[INFO] [stdout]   --> src/bam_record_extention.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout]  5 | pub struct ReadRecord {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub nn: Option<Vec<u8>>,
[INFO] [stdout]    |         ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ReadRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `u32` is never used
[INFO] [stdout]   --> src/bam_record_extention.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 45 | pub trait AuxExt<'a> {
[INFO] [stdout]    |           ------ method in this trait
[INFO] [stdout] 46 |     fn i32(&self, tag: &[u8]) -> Option<i32>; // ch:i, cx:i …
[INFO] [stdout] 47 |     fn u32(&self, tag: &[u8]) -> Option<u32>; // np:i, cx:i …
[INFO] [stdout]    |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `slice_seq_qual` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:424:4
[INFO] [stdout]     |
[INFO] [stdout] 424 | fn slice_seq_qual<'a>(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `finish` is never used
[INFO] [stdout]    --> src/io_utils.rs:137:8
[INFO] [stdout]     |
[INFO] [stdout] 131 | pub trait ReadWriter {
[INFO] [stdout]     |           ---------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 137 |     fn finish(&mut self) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `inner` is never read
[INFO] [stdout]    --> src/io_utils.rs:361:9
[INFO] [stdout]     |
[INFO] [stdout] 360 |     Jsonl {
[INFO] [stdout]     |     ----- field in this variant
[INFO] [stdout] 361 |         inner: BufWriter<File>,
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `inner` and `wrote_header` are never read
[INFO] [stdout]    --> src/io_utils.rs:364:9
[INFO] [stdout]     |
[INFO] [stdout] 363 |     Tsv {
[INFO] [stdout]     |     --- fields in this variant
[INFO] [stdout] 364 |         inner: BufWriter<File>,
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout] 365 |         wrote_header: bool,
[INFO] [stdout]     |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_header_if_needed` is never used
[INFO] [stdout]    --> src/io_utils.rs:382:4
[INFO] [stdout]     |
[INFO] [stdout] 382 | fn write_header_if_needed(sink: &mut LineSink) -> io::Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `CompactRec` is never constructed
[INFO] [stdout]    --> src/io_utils.rs:397:12
[INFO] [stdout]     |
[INFO] [stdout] 397 | pub struct CompactRec {
[INFO] [stdout]     |            ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `to_compact_rec` is never used
[INFO] [stdout]    --> src/io_utils.rs:404:8
[INFO] [stdout]     |
[INFO] [stdout] 404 | pub fn to_compact_rec(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_record` is never used
[INFO] [stdout]    --> src/io_utils.rs:421:8
[INFO] [stdout]     |
[INFO] [stdout] 421 | pub fn write_record(sink: &mut LineSink, rec: &CompactRec) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `flush_sink` is never used
[INFO] [stdout]    --> src/io_utils.rs:439:8
[INFO] [stdout]     |
[INFO] [stdout] 439 | pub fn flush_sink(sink: &mut LineSink) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_bar_pb` is never used
[INFO] [stdout]  --> src/pbar.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn get_bar_pb(message: String, interval: Duration, total: u64) -> ProgressBar {
[INFO] [stdout]   |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `distance` and `single_end` are never read
[INFO] [stdout]   --> src/core_context.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub struct PrimerPair {
[INFO] [stdout]    |            ---------- fields in this struct
[INFO] [stdout] 16 |     pub primer_id: String,
[INFO] [stdout] 17 |     pub distance: (i32, i32),
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub single_end: bool,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PrimerPair` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `PrimerMeta` is never constructed
[INFO] [stdout]   --> src/core_context.rs:32:12
[INFO] [stdout]    |
[INFO] [stdout] 32 | pub struct PrimerMeta {
[INFO] [stdout]    |            ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Annotated` is never constructed
[INFO] [stdout]   --> src/core_context.rs:40:12
[INFO] [stdout]    |
[INFO] [stdout] 40 | pub struct Annotated<T> {
[INFO] [stdout]    |            ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `pattern` is never read
[INFO] [stdout]   --> src/primer_myers.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 |     MyersLong {
[INFO] [stdout]    |     --------- field in this variant
[INFO] [stdout] 16 |         myers: MyersLong<u8>,
[INFO] [stdout] 17 |         pattern: String,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `pattern` is never used
[INFO] [stdout]   --> src/primer_myers.rs:23:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl MayersPattern {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] 22 |     #[inline]
[INFO] [stdout] 23 |     pub fn pattern(&self) -> &str {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `RG` should have a snake case name
[INFO] [stdout]   --> src/bam_record_extention.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub RG: Option<String>,
[INFO] [stdout]    |         ^^ help: convert the identifier to snake case: `rg`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 56s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634", kill_on_drop: false }`
[INFO] [stdout] e03c9a9c28a7ef81bd1ea4f88ba8d415fa755aa12f203eb36bce6201c596e634
