[INFO] cloning repository https://github.com/Markkus205/bamsam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Markkus205/bamsam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarkkus205%2Fbamsam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarkkus205%2Fbamsam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 35088fcbaf0401da65cbcdbd40d22cd89fa94292
[INFO] checking Markkus205/bamsam against c9ff496891c278ad660bc0ab85c1f0b72059464a for pr-160491
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMarkkus205%2Fbamsam" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Markkus205/bamsam
[INFO] finished tweaking git repo https://github.com/Markkus205/bamsam
[INFO] tweaked toml for git repo https://github.com/Markkus205/bamsam written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Markkus205/bamsam on toolchain c9ff496891c278ad660bc0ab85c1f0b72059464a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c9ff496891c278ad660bc0ab85c1f0b72059464a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Markkus205/bamsam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c9ff496891c278ad660bc0ab85c1f0b72059464a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded noodles-core v0.17.0
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.39.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded noodles-csi v0.47.0
[INFO] [stderr]   Downloaded clap v4.5.35
[INFO] [stderr]   Downloaded noodles-bam v0.79.0
[INFO] [stderr]   Downloaded noodles-sam v0.75.0
[INFO] [stderr]   Downloaded clap_builder v4.5.35
[INFO] [stderr]   Downloaded zlib-rs v0.5.0
[INFO] [stderr]   Downloaded curl-sys v0.4.80+curl-8.12.1
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc
[INFO] running `Command { std: "docker" "start" "c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc" "/opt/rustwide/cargo-home/bin/cargo" "+c9ff496891c278ad660bc0ab85c1f0b72059464a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc" "/opt/rustwide/cargo-home/bin/cargo" "+c9ff496891c278ad660bc0ab85c1f0b72059464a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking lexical-util v1.0.6
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]     Checking zlib-rs v0.5.0
[INFO] [stderr]     Checking miniz_oxide v0.8.8
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bitflags v2.9.0
[INFO] [stderr]     Checking smallvec v1.15.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]     Checking icu_normalizer v1.5.0
[INFO] [stderr]     Checking lexical-write-integer v1.0.5
[INFO] [stderr]    Compiling cc v1.2.19
[INFO] [stderr]     Checking lexical-parse-integer v1.0.5
[INFO] [stderr]     Checking libz-rs-sys v0.5.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking flate2 v1.1.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking bstr v1.12.0
[INFO] [stderr]     Checking indexmap v2.9.0
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]     Checking noodles-bgzf v0.39.0
[INFO] [stderr]     Checking noodles-core v0.17.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking idna_adapter v1.2.0
[INFO] [stderr]     Checking lexical-write-float v1.0.5
[INFO] [stderr]     Checking lexical-parse-float v1.0.5
[INFO] [stderr]     Checking anstyle v1.0.10
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.5.0+3.5.0
[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]     Checking lexical-core v1.0.5
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking anstream v0.6.18
[INFO] [stderr]     Checking noodles-csi v0.47.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling openssl-sys v0.9.107
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.80+curl-8.12.1
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]     Checking clap_lex v0.7.4
[INFO] [stderr]     Checking clap_builder v4.5.35
[INFO] [stderr]     Checking noodles-sam v0.75.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking url v2.5.4
[INFO] [stderr]     Checking serde v1.0.219
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking noodles-bam v0.79.0
[INFO] [stderr]     Checking clap v4.5.35
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking rust-htslib v0.49.0
[INFO] [stderr]     Checking bam_workflow_runner v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 5m 06s
[INFO] running `Command { std: "docker" "inspect" "c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc", kill_on_drop: false }`
[INFO] [stdout] c2375031312184094a85b7719f0357b16ff4dad01584c31f83fdebb59f55b8fc
