[INFO] cloning repository https://github.com/KingofLaniakea/Straglr-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/KingofLaniakea/Straglr-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FKingofLaniakea%2FStraglr-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FKingofLaniakea%2FStraglr-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] af3897354bf6635d887b0cf1e1a93bd626783234 [INFO] checking KingofLaniakea/Straglr-rs against c9ff496891c278ad660bc0ab85c1f0b72059464a for pr-160491 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FKingofLaniakea%2FStraglr-rs" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/KingofLaniakea/Straglr-rs [INFO] finished tweaking git repo https://github.com/KingofLaniakea/Straglr-rs [INFO] tweaked toml for git repo https://github.com/KingofLaniakea/Straglr-rs written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/KingofLaniakea/Straglr-rs on toolchain c9ff496891c278ad660bc0ab85c1f0b72059464a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c9ff496891c278ad660bc0ab85c1f0b72059464a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/KingofLaniakea/Straglr-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c9ff496891c278ad660bc0ab85c1f0b72059464a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rust-htslib v0.48.0 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded libz-sys v1.1.24 [INFO] [stderr] Downloaded curl-sys v0.4.85+curl-8.18.0 [INFO] [stderr] Downloaded openssl-src v300.5.5+3.5.5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72 [INFO] running `Command { std: "docker" "start" "cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72" "/opt/rustwide/cargo-home/bin/cargo" "+c9ff496891c278ad660bc0ab85c1f0b72059464a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72" "/opt/rustwide/cargo-home/bin/cargo" "+c9ff496891c278ad660bc0ab85c1f0b72059464a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Compiling zerocopy v0.8.40 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling cc v1.2.56 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Compiling cmake v0.1.57 [INFO] [stderr] Compiling openssl-src v300.5.5+3.5.5 [INFO] [stderr] Compiling libz-sys v1.1.24 [INFO] [stderr] Compiling openssl-sys v0.9.111 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling curl-sys v0.4.85+curl-8.18.0 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling bitflags v2.11.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking icu_normalizer v2.1.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking percent-encoding v2.3.2 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking form_urlencoded v1.2.2 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking clap_builder v4.5.60 [INFO] [stderr] Checking rustix v1.1.4 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking getrandom v0.4.2 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Checking is-terminal v0.4.17 [INFO] [stderr] Checking once_cell v1.21.3 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking humantime v2.3.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking env_logger v0.10.2 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Checking tempfile v3.26.0 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking clap v4.5.60 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking statrs v0.16.1 [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72", kill_on_drop: false }` [INFO] [stdout] cb5117924139262c493dd531c9a8d088c3f1133476fd1344677b99f07cf88b72