[INFO] cloning repository https://github.com/SamD28/ONT-read-check
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SamD28/ONT-read-check" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSamD28%2FONT-read-check", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSamD28%2FONT-read-check'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9b97cab8458f01d300278787adcf34cc7e088aa4
[INFO] checking SamD28/ONT-read-check/9b97cab8458f01d300278787adcf34cc7e088aa4 against 846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9 for pr-160391-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSamD28%2FONT-read-check" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/SamD28/ONT-read-check
[INFO] finished tweaking git repo https://github.com/SamD28/ONT-read-check
[INFO] tweaked toml for git repo https://github.com/SamD28/ONT-read-check written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/SamD28/ONT-read-check on toolchain 846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/SamD28/ONT-read-check already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 35 packages to highest Rust 1.101.0-nightly compatible versions
[INFO] [stderr]     Updating anstream v0.6.21 -> v1.0.0
[INFO] [stderr]     Updating anstyle v1.0.13 -> v1.0.14
[INFO] [stderr]     Updating anstyle-parse v0.2.7 -> v1.0.0
[INFO] [stderr]     Updating bit-vec v0.8.0 -> v0.9.1
[INFO] [stderr]       Adding block-buffer v0.12.1
[INFO] [stderr]     Updating clap v4.5.56 -> v4.6.7
[INFO] [stderr]     Updating clap_builder v4.5.56 -> v4.6.7
[INFO] [stderr]     Updating clap_derive v4.5.55 -> v4.6.7
[INFO] [stderr]     Updating clap_lex v0.7.7 -> v1.1.1
[INFO] [stderr]       Adding const-oid v0.10.2
[INFO] [stderr]     Updating cpufeatures v0.2.17 -> v0.3.1
[INFO] [stderr]       Adding crypto-common v0.2.2
[INFO] [stderr]       Adding digest v0.11.3
[INFO] [stderr]     Updating flate2 v1.1.8 -> v1.1.10
[INFO] [stderr]       Adding hybrid-array v0.4.10 (available: v0.4.15)
[INFO] [stderr]     Updating lzma-rust2 v0.15.7 -> v0.16.5
[INFO] [stderr]     Updating miniz_oxide v0.8.9 -> v0.9.1
[INFO] [stderr]     Updating noodles v0.104.0 -> v0.108.0 (available: v0.119.0)
[INFO] [stderr]     Updating noodles-bam v0.85.0 -> v0.87.0
[INFO] [stderr]     Updating noodles-bcf v0.81.0 -> v0.84.0
[INFO] [stderr]     Updating noodles-bgzf v0.45.0 -> v0.46.0
[INFO] [stderr]     Updating noodles-core v0.18.0 -> v0.19.0
[INFO] [stderr]     Updating noodles-cram v0.88.0 -> v0.91.0
[INFO] [stderr]     Updating noodles-csi v0.53.0 -> v0.55.0
[INFO] [stderr]     Updating noodles-fasta v0.58.0 -> v0.60.0
[INFO] [stderr]     Updating noodles-fastq v0.21.0 -> v0.22.0
[INFO] [stderr]     Updating noodles-gff v0.54.0 -> v0.56.0
[INFO] [stderr]     Updating noodles-sam v0.81.0 -> v0.83.0
[INFO] [stderr]     Updating noodles-tabix v0.59.0 -> v0.61.0
[INFO] [stderr]     Updating noodles-vcf v0.83.0 -> v0.86.0
[INFO] [stderr]     Updating proc-macro2 v1.0.103 -> v1.0.107
[INFO] [stderr]     Updating quote v1.0.42 -> v1.0.47
[INFO] [stderr]     Updating sha2 v0.10.9 -> v0.11.1
[INFO] [stderr]       Adding syn v3.0.9
[INFO] [stderr]     Updating zlib-rs v0.5.5 -> v0.6.8
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-csi v0.55.0
[INFO] [stderr]   Downloaded noodles v0.108.0
[INFO] [stderr]   Downloaded noodles-core v0.19.0
[INFO] [stderr]   Downloaded noodles-tabix v0.61.0
[INFO] [stderr]   Downloaded noodles-fasta v0.60.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.46.0
[INFO] [stderr]   Downloaded noodles-fastq v0.22.0
[INFO] [stderr]   Downloaded noodles-gff v0.56.0
[INFO] [stderr]   Downloaded noodles-bam v0.87.0
[INFO] [stderr]   Downloaded noodles-vcf v0.86.0
[INFO] [stderr]   Downloaded noodles-bcf v0.84.0
[INFO] [stderr]   Downloaded noodles-sam v0.83.0
[INFO] [stderr]   Downloaded noodles-cram v0.91.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c0af3998e971868164375a7dfb646c9933ddd1a3bdb00fa2041266763dc1eeab" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4
[INFO] running `Command { std: "docker" "start" "f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4" "/opt/rustwide/cargo-home/bin/cargo" "+846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4" "/opt/rustwide/cargo-home/bin/cargo" "+846e51f66b1e7b49ba9e3988c58ccfe5817ce0a9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking tokio v1.49.0
[INFO] [stderr]     Checking clap_lex v1.1.1
[INFO] [stderr]     Checking rustc-hash v2.1.1
[INFO] [stderr]     Checking futures-util v0.3.31
[INFO] [stderr]     Checking anstream v1.0.0
[INFO] [stderr]     Checking miniz_oxide v0.9.1
[INFO] [stderr]     Checking clap_builder v4.6.7
[INFO] [stderr]     Checking flate2 v1.1.10
[INFO] [stderr]    Compiling quote v1.0.47
[INFO] [stderr]    Compiling syn v3.0.9
[INFO] [stderr]     Checking futures v0.3.31
[INFO] [stderr]    Compiling clap_derive v4.6.7
[INFO] [stderr]     Checking noodles-fastq v0.22.0
[INFO] [stderr]     Checking noodles v0.108.0
[INFO] [stderr]     Checking clap v4.6.7
[INFO] [stderr]     Checking read_check v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.88s
[INFO] running `Command { std: "docker" "inspect" "f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4", kill_on_drop: false }`
[INFO] [stdout] f0395b0d4dfd7738e8bbe2b20874c30012fe8dc3b66dee4da3386556062c27c4
