[INFO] cloning repository https://github.com/Clinical-Genomics/scout_loader [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Clinical-Genomics/scout_loader" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FClinical-Genomics%2Fscout_loader", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FClinical-Genomics%2Fscout_loader'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1e9a09d41df937d87a0aae56b162c4766b6a51da [INFO] checking Clinical-Genomics/scout_loader against c319ab3d7cf6bd67099fd3635f0e3c0fccb07e40 for pr-160391-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FClinical-Genomics%2Fscout_loader" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-2-tc2/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/Clinical-Genomics/scout_loader [INFO] finished tweaking git repo https://github.com/Clinical-Genomics/scout_loader [INFO] tweaked toml for git repo https://github.com/Clinical-Genomics/scout_loader written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/Clinical-Genomics/scout_loader on toolchain c319ab3d7cf6bd67099fd3635f0e3c0fccb07e40 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c319ab3d7cf6bd67099fd3635f0e3c0fccb07e40" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/Clinical-Genomics/scout_loader already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c319ab3d7cf6bd67099fd3635f0e3c0fccb07e40" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c0af3998e971868164375a7dfb646c9933ddd1a3bdb00fa2041266763dc1eeab" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a [INFO] running `Command { std: "docker" "start" "bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a" "/opt/rustwide/cargo-home/bin/cargo" "+c319ab3d7cf6bd67099fd3635f0e3c0fccb07e40" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a" "/opt/rustwide/cargo-home/bin/cargo" "+c319ab3d7cf6bd67099fd3635f0e3c0fccb07e40" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-ident v1.0.27 [INFO] [stderr] Compiling libc v0.2.191 [INFO] [stderr] Compiling find-msvc-tools v0.1.15 [INFO] [stderr] Checking cfg-if v1.0.5 [INFO] [stderr] Compiling portable-atomic v1.15.0 [INFO] [stderr] Checking smallvec v1.16.3 [INFO] [stderr] Checking critical-section v1.2.0 [INFO] [stderr] Compiling icu_properties_data v2.4.0 [INFO] [stderr] Compiling icu_normalizer_data v2.4.0 [INFO] [stderr] Compiling getrandom v0.4.3 [INFO] [stderr] Compiling tiny-keccak v2.0.2 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling crunchy v0.2.4 [INFO] [stderr] Checking equivalent v1.0.3 [INFO] [stderr] Checking hybrid-array v0.4.15 [INFO] [stderr] Checking futures-sink v0.3.34 [INFO] [stderr] Checking cmov v0.5.4 [INFO] [stderr] Compiling once_cell v1.21.4 [INFO] [stderr] Compiling proc-macro2 v1.0.107 [INFO] [stderr] Compiling zerocopy v0.8.63 [INFO] [stderr] Compiling crossbeam-utils v0.8.23 [INFO] [stderr] Checking regex-syntax v0.8.11 [INFO] [stderr] Checking indexmap v2.14.2 [INFO] [stderr] Checking futures-channel v0.3.34 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Compiling either v1.19.0 [INFO] [stderr] Compiling bindgen v0.72.1 [INFO] [stderr] Checking zeroize v1.9.1 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking ctutils v0.4.5 [INFO] [stderr] Checking chacha20 v0.10.2 [INFO] [stderr] Compiling bitflags v2.13.2 [INFO] [stderr] Compiling crossbeam-epoch v0.9.21 [INFO] [stderr] Checking rustls-pki-types v1.15.1 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking crypto-common v0.2.2 [INFO] [stderr] Checking block-buffer v0.12.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling quote v1.0.47 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling time-core v0.1.9 [INFO] [stderr] Compiling serde_json v1.0.154 [INFO] [stderr] Compiling num-conv v0.2.2 [INFO] [stderr] Compiling unicode-segmentation v1.13.3 [INFO] [stderr] Compiling rustls v0.23.46 [INFO] [stderr] Checking data-encoding v2.11.1 [INFO] [stderr] Compiling syn v3.0.9 [INFO] [stderr] Compiling syn v2.0.119 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling time-macros v0.2.32 [INFO] [stderr] Compiling rustc_version_runtime v0.3.0 [INFO] [stderr] Checking crossbeam-channel v0.5.17 [INFO] [stderr] Checking tracing-core v0.1.36 [INFO] [stderr] Checking log v0.4.34 [INFO] [stderr] Checking deranged v0.5.9 [INFO] [stderr] Compiling convert_case v0.10.0 [INFO] [stderr] Checking digest v0.11.3 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Compiling crc32fast v1.5.3 [INFO] [stderr] Checking powerfmt v0.2.1 [INFO] [stderr] Checking semver v1.0.28 [INFO] [stderr] Checking tagptr v0.2.0 [INFO] [stderr] Checking bitvec v1.1.1 [INFO] [stderr] Checking unicode-normalization v0.1.26 [INFO] [stderr] Compiling jobserver v0.1.35 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Compiling clang-sys v1.9.1 [INFO] [stderr] Checking rustc_version v0.4.1 [INFO] [stderr] Compiling const-random-macro v0.1.16 [INFO] [stderr] Compiling cc v1.10.0 [INFO] [stderr] Checking errno v0.3.14 [INFO] [stderr] Checking signal-hook-registry v1.4.8 [INFO] [stderr] Checking mio v1.2.4 [INFO] [stderr] Checking socket2 v0.6.5 [INFO] [stderr] Checking getrandom v0.3.4 [INFO] [stderr] Compiling regex-automata v0.4.18 [INFO] [stderr] Compiling const-random v0.1.18 [INFO] [stderr] Checking rand_core v0.9.5 [INFO] [stderr] Checking rand v0.10.3 [INFO] [stderr] Checking uuid v1.28.0 [INFO] [stderr] Checking parking_lot_core v0.9.12 [INFO] [stderr] Checking serde_bytes v0.11.19 [INFO] [stderr] Checking unicode-bidi v0.3.18 [INFO] [stderr] Checking parking_lot v0.12.5 [INFO] [stderr] Checking winnow v0.7.15 [INFO] [stderr] Checking lazy_static v1.5.1 [INFO] [stderr] Checking resolv-conf v0.7.6 [INFO] [stderr] Checking simd-adler32 v0.3.10 [INFO] [stderr] Checking clap_lex v1.1.1 [INFO] [stderr] Checking moka v0.12.16 [INFO] [stderr] Checking unicode-properties v0.1.4 [INFO] [stderr] Checking console v0.16.6 [INFO] [stderr] Checking miniz_oxide v0.9.1 [INFO] [stderr] Checking clap_builder v4.6.7 [INFO] [stderr] Checking stringprep v0.1.5 [INFO] [stderr] Checking sha1 v0.11.0 [INFO] [stderr] Checking pbkdf2 v0.13.0 [INFO] [stderr] Checking sha2 v0.11.1 [INFO] [stderr] Checking md-5 v0.11.0 [INFO] [stderr] Checking time v0.3.55 [INFO] [stderr] Checking hmac v0.13.0 [INFO] [stderr] Checking webpki-roots v1.0.11 [INFO] [stderr] Compiling rustix v1.1.5 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking unsafe-libyaml v0.2.11 [INFO] [stderr] Checking take_mut v0.2.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking predicates-core v1.0.10 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking indicatif v0.18.6 [INFO] [stderr] Checking flate2 v1.1.10 [INFO] [stderr] Checking float-cmp v0.10.0 [INFO] [stderr] Checking difflib v0.4.0 [INFO] [stderr] Checking termtree v0.5.1 [INFO] [stderr] Compiling assert_cmd v2.2.2 [INFO] [stderr] Checking md5 v0.8.1 [INFO] [stderr] Compiling cmake v0.1.58 [INFO] [stderr] Compiling openssl-src v300.6.1+3.6.3 [INFO] [stderr] Checking normalize-line-endings v0.3.0 [INFO] [stderr] Checking predicates-tree v1.0.13 [INFO] [stderr] Checking wait-timeout v0.2.1 [INFO] [stderr] Compiling regex v1.13.1 [INFO] [stderr] Compiling libz-sys v1.1.30 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling openssl-sys v0.9.117 [INFO] [stderr] Compiling curl-sys v0.4.91+curl-8.22.0 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking bstr v1.13.1 [INFO] [stderr] Checking predicates v3.1.4 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking ahash v0.8.12 [INFO] [stderr] Compiling synstructure v0.14.0 [INFO] [stderr] Compiling darling_core v0.24.1 [INFO] [stderr] Checking tempfile v3.27.0 [INFO] [stderr] Compiling macro_magic_core_macros v0.5.1 [INFO] [stderr] Compiling derive-syn-parse v0.2.0 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling typed-builder-macro v0.22.0 [INFO] [stderr] Compiling derive_more-impl v2.1.1 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking rand v0.9.5 [INFO] [stderr] Compiling zerofrom-derive v0.1.8 [INFO] [stderr] Compiling yoke-derive v0.8.4 [INFO] [stderr] Compiling zerovec-derive v0.11.7 [INFO] [stderr] Compiling displaydoc v0.2.7 [INFO] [stderr] Compiling serde_derive v1.0.229 [INFO] [stderr] Compiling futures-macro v0.3.34 [INFO] [stderr] Compiling thiserror-impl v2.0.21 [INFO] [stderr] Compiling tokio-macros v2.7.2 [INFO] [stderr] Compiling macro_magic_core v0.5.1 [INFO] [stderr] Compiling async-trait v0.1.92 [INFO] [stderr] Checking futures-util v0.3.34 [INFO] [stderr] Checking rustls-webpki v0.103.16 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Compiling derive-where v1.7.0 [INFO] [stderr] Checking tokio v1.54.1 [INFO] [stderr] Compiling clap_derive v4.6.7 [INFO] [stderr] Compiling macro_magic_macros v0.5.1 [INFO] [stderr] Checking typed-builder v0.22.0 [INFO] [stderr] Checking thiserror v2.0.21 [INFO] [stderr] Checking derive_more v2.1.1 [INFO] [stderr] Checking zerofrom v0.1.8 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking yoke v0.8.4 [INFO] [stderr] Compiling macro_magic v0.5.1 [INFO] [stderr] Compiling mongodb-internal-macros v3.9.1 [INFO] [stderr] Checking zerovec v0.11.9 [INFO] [stderr] Checking zerotrie v0.2.5 [INFO] [stderr] Checking tinystr v0.8.5 [INFO] [stderr] Checking potential_utf v0.1.6 [INFO] [stderr] Checking icu_collections v2.4.0 [INFO] [stderr] Checking clap v4.6.7 [INFO] [stderr] Checking icu_locale_core v2.4.0 [INFO] [stderr] Compiling darling_macro v0.24.1 [INFO] [stderr] Compiling darling v0.24.1 [INFO] [stderr] Checking serde v1.0.229 [INFO] [stderr] Compiling serde_with_macros v3.24.0 [INFO] [stderr] Checking ipnet v2.12.2 [INFO] [stderr] Checking toml_datetime v0.6.11 [INFO] [stderr] Checking serde_spanned v0.6.9 [INFO] [stderr] Checking bson v2.15.0 [INFO] [stderr] Checking serde_yaml v0.9.34+deprecated [INFO] [stderr] Checking toml_edit v0.22.27 [INFO] [stderr] Compiling hts-sys v2.2.1 [INFO] [stderr] Checking prefix-trie v0.8.4 [INFO] [stderr] Checking serde_with v3.24.0 [INFO] [stderr] Checking icu_provider v2.4.0 [INFO] [stderr] Checking icu_normalizer v2.4.0 [INFO] [stderr] Checking icu_properties v2.4.0 [INFO] [stderr] Checking toml v0.8.23 [INFO] [stderr] Checking futures-executor v0.3.34 [INFO] [stderr] Checking futures v0.3.34 [INFO] [stderr] Checking idna_adapter v1.2.2 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Checking hickory-proto v0.26.3 [INFO] [stderr] Checking tokio-util v0.7.20 [INFO] [stderr] Checking tokio-rustls v0.26.6 [INFO] [stderr] Checking hickory-net v0.26.3 [INFO] [stderr] Checking hickory-resolver v0.26.3 [INFO] [stderr] Checking mongodb v3.9.1 [INFO] [stderr] Checking rust-htslib v1.0.2 [INFO] [stderr] Checking scout_loader v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 25s [INFO] running `Command { std: "docker" "inspect" "bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a", kill_on_drop: false }` [INFO] [stdout] bbc836a444b2e2475fd08352a083aaa73122d318ce2873f73c576d3543c3503a