[INFO] cloning repository https://github.com/stela2502/bam_re_tagger
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/bam_re_tagger" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_re_tagger", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_re_tagger'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c80bf7d4802ade4ad7c8b5596a309728143abb2a
[INFO] checking stela2502/bam_re_tagger against 165655a2f1981fef27b31c547ad7631979fc5139 for pr-160235
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_re_tagger" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/bam_re_tagger
[INFO] finished tweaking git repo https://github.com/stela2502/bam_re_tagger
[INFO] tweaked toml for git repo https://github.com/stela2502/bam_re_tagger written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/bam_re_tagger on toolchain 165655a2f1981fef27b31c547ad7631979fc5139
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+165655a2f1981fef27b31c547ad7631979fc5139" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/bam_re_tagger already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+165655a2f1981fef27b31c547ad7631979fc5139" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded rust-htslib v0.41.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded cmake v0.1.51
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded textwrap v0.16.1
[INFO] [stderr]   Downloaded libc v0.2.160
[INFO] [stderr]   Downloaded curl-sys v0.4.77+curl-8.10.1
[INFO] [stderr]   Downloaded hts-sys v2.1.4
[INFO] [stderr]   Downloaded openssl-src v300.3.2+3.3.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697
[INFO] running `Command { std: "docker" "start" "46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697" "/opt/rustwide/cargo-home/bin/cargo" "+165655a2f1981fef27b31c547ad7631979fc5139" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697" "/opt/rustwide/cargo-home/bin/cargo" "+165655a2f1981fef27b31c547ad7631979fc5139" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.160
[INFO] [stderr]    Compiling proc-macro2 v1.0.88
[INFO] [stderr]    Compiling unicode-ident v1.0.13
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling thiserror v1.0.64
[INFO] [stderr]     Checking regex-automata v0.4.8
[INFO] [stderr]     Checking unicode-normalization v0.1.24
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]     Checking unicode-bidi v0.3.17
[INFO] [stderr]    Compiling portable-atomic v1.9.0
[INFO] [stderr]     Checking os_str_bytes v6.6.1
[INFO] [stderr]     Checking textwrap v0.16.1
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking idna v0.5.0
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]     Checking url v2.5.2
[INFO] [stderr]    Compiling cc v1.1.30
[INFO] [stderr]    Compiling syn v2.0.79
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking console v0.15.8
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking indicatif v0.17.8
[INFO] [stderr]    Compiling cmake v0.1.51
[INFO] [stderr]    Compiling openssl-src v300.3.2+3.3.2
[INFO] [stderr]    Compiling curl-sys v0.4.77+curl-8.10.1
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling hts-sys v2.1.4
[INFO] [stderr]    Compiling libz-sys v1.1.20
[INFO] [stderr]    Compiling openssl-sys v0.9.104
[INFO] [stderr]     Checking regex v1.11.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.64
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking clap v3.2.25
[INFO] [stderr]     Checking rust-htslib v0.41.1
[INFO] [stderr]     Checking bam_re_tagger v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 46.19s
[INFO] running `Command { std: "docker" "inspect" "46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697", kill_on_drop: false }`
[INFO] [stdout] 46b9b2ca7ecbc3a3c028f0d0e5b3fc8462e122e1e9e775878964209711d4c697
