[INFO] fetching crate cgdist 0.1.2...
[INFO] checking cgdist-0.1.2 against f99a7560a6b5f0a5e6894aea7e8afe0e01d3edd1 for pr-160235-1
[INFO] extracting crate cgdist 0.1.2 into /workspace/builds/worker-1-tc2/source
[INFO] started tweaking crates.io crate cgdist 0.1.2
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate cgdist 0.1.2
[INFO] tweaked toml for crates.io crate cgdist 0.1.2 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate cgdist 0.1.2 on toolchain f99a7560a6b5f0a5e6894aea7e8afe0e01d3edd1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f99a7560a6b5f0a5e6894aea7e8afe0e01d3edd1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate cgdist 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f99a7560a6b5f0a5e6894aea7e8afe0e01d3edd1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]    --> Cargo.toml:111:1
[INFO] [stderr]     |
[INFO] [stderr] 111 | readme = "README.md"
[INFO] [stderr]     | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: binary `check_samples_in_matrix` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /workspace/builds/worker-1-tc2/source/target/.../check_samples_in_matrix
[INFO] [stderr]   |                                                  ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `check-samples-in-matrix`, convert `bin.name`
[INFO] [stderr]  --> Cargo.toml:6:8
[INFO] [stderr]   |
[INFO] [stderr] 6 - name = "check_samples_in_matrix"
[INFO] [stderr] 6 + name = "check-samples-in-matrix"
[INFO] [stderr]   |
[INFO] [stderr] warning: binary `recombination_analyzer` should have a kebab-case name
[INFO] [stderr]    |
[INFO] [stderr]  1 | /workspace/builds/worker-1-tc2/source/target/.../recombination_analyzer
[INFO] [stderr]    |                                                  ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: to change the binary name to `recombination-analyzer`, convert `bin.name`
[INFO] [stderr]   --> Cargo.toml:14:8
[INFO] [stderr]    |
[INFO] [stderr] 14 - name = "recombination_analyzer"
[INFO] [stderr] 14 + name = "recombination-analyzer"
[INFO] [stderr]    |
[INFO] [stderr] warning: binary `recombination_candidate_analyzer` should have a kebab-case name
[INFO] [stderr]    |
[INFO] [stderr]  1 | /workspace/builds/worker-1-tc2/source/target/.../recombination_candidate_analyzer
[INFO] [stderr]    |                                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: to change the binary name to `recombination-candidate-analyzer`, convert `bin.name`
[INFO] [stderr]   --> Cargo.toml:18:8
[INFO] [stderr]    |
[INFO] [stderr] 18 - name = "recombination_candidate_analyzer"
[INFO] [stderr] 18 + name = "recombination-candidate-analyzer"
[INFO] [stderr]    |
[INFO] [stderr] warning: binary `verify_recombination_distances` should have a kebab-case name
[INFO] [stderr]    |
[INFO] [stderr]  1 | /workspace/builds/worker-1-tc2/source/target/.../verify_recombination_distances
[INFO] [stderr]    |                                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: to change the binary name to `verify-recombination-distances`, convert `bin.name`
[INFO] [stderr]   --> Cargo.toml:22:8
[INFO] [stderr]    |
[INFO] [stderr] 22 - name = "verify_recombination_distances"
[INFO] [stderr] 22 + name = "verify-recombination-distances"
[INFO] [stderr]    |
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:107:12
[INFO] [stderr]     |
[INFO] [stderr] 107 | homepage = "https://github.com/genpat-it/cgDist"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 112 | repository = "https://github.com/genpat-it/cgDist"
[INFO] [stderr]     |              -------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `cgdist` (manifest) generated 6 warnings
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613
[INFO] running `Command { std: "docker" "start" "ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613" "/opt/rustwide/cargo-home/bin/cargo" "+f99a7560a6b5f0a5e6894aea7e8afe0e01d3edd1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613" "/opt/rustwide/cargo-home/bin/cargo" "+f99a7560a6b5f0a5e6894aea7e8afe0e01d3edd1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]    --> Cargo.toml:111:1
[INFO] [stderr]     |
[INFO] [stderr] 111 | readme = "README.md"
[INFO] [stderr]     | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: binary `check_samples_in_matrix` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /opt/rustwide/target/.../check_samples_in_matrix
[INFO] [stderr]   |                          ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `check-samples-in-matrix`, convert `bin.name`
[INFO] [stderr]  --> Cargo.toml:6:8
[INFO] [stderr]   |
[INFO] [stderr] 6 - name = "check_samples_in_matrix"
[INFO] [stderr] 6 + name = "check-samples-in-matrix"
[INFO] [stderr]   |
[INFO] [stderr] warning: binary `recombination_analyzer` should have a kebab-case name
[INFO] [stderr]    |
[INFO] [stderr]  1 | /opt/rustwide/target/.../recombination_analyzer
[INFO] [stderr]    |                          ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: to change the binary name to `recombination-analyzer`, convert `bin.name`
[INFO] [stderr]   --> Cargo.toml:14:8
[INFO] [stderr]    |
[INFO] [stderr] 14 - name = "recombination_analyzer"
[INFO] [stderr] 14 + name = "recombination-analyzer"
[INFO] [stderr]    |
[INFO] [stderr] warning: binary `recombination_candidate_analyzer` should have a kebab-case name
[INFO] [stderr]    |
[INFO] [stderr]  1 | /opt/rustwide/target/.../recombination_candidate_analyzer
[INFO] [stderr]    |                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: to change the binary name to `recombination-candidate-analyzer`, convert `bin.name`
[INFO] [stderr]   --> Cargo.toml:18:8
[INFO] [stderr]    |
[INFO] [stderr] 18 - name = "recombination_candidate_analyzer"
[INFO] [stderr] 18 + name = "recombination-candidate-analyzer"
[INFO] [stderr]    |
[INFO] [stderr] warning: binary `verify_recombination_distances` should have a kebab-case name
[INFO] [stderr]    |
[INFO] [stderr]  1 | /opt/rustwide/target/.../verify_recombination_distances
[INFO] [stderr]    |                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: to change the binary name to `verify-recombination-distances`, convert `bin.name`
[INFO] [stderr]   --> Cargo.toml:22:8
[INFO] [stderr]    |
[INFO] [stderr] 22 - name = "verify_recombination_distances"
[INFO] [stderr] 22 + name = "verify-recombination-distances"
[INFO] [stderr]    |
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:107:12
[INFO] [stderr]     |
[INFO] [stderr] 107 | homepage = "https://github.com/genpat-it/cgDist"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 112 | repository = "https://github.com/genpat-it/cgDist"
[INFO] [stderr]     |              -------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `cgdist` (manifest) generated 6 warnings
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling zerocopy v0.8.48
[INFO] [stderr]     Checking memchr v2.8.0
[INFO] [stderr]     Checking num-traits v0.2.19
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]     Checking typenum v1.20.0
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling linux-raw-sys v0.4.15
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling home v0.5.12
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling cc v1.2.61
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking hashbrown v0.17.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]     Checking generic-array v0.14.7
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]    Compiling anyhow v1.0.102
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking block-buffer v0.10.4
[INFO] [stderr]     Checking crypto-common v0.1.7
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking toml_write v0.1.2
[INFO] [stderr]    Compiling argh_shared v0.1.19
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking winnow v0.7.15
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling argh_derive v0.1.19
[INFO] [stderr]     Checking toml_datetime v0.6.11
[INFO] [stderr]     Checking serde_spanned v0.6.9
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking toml_edit v0.22.27
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling libparasail-sys v0.1.12
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking rmp v0.8.15
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking indicatif v0.17.11
[INFO] [stderr]     Checking chrono v0.4.44
[INFO] [stderr]     Checking rmp-serde v1.3.1
[INFO] [stderr]     Checking sha2 v0.10.9
[INFO] [stderr]     Checking lz4_flex v0.11.6
[INFO] [stderr]     Checking toml v0.8.23
[INFO] [stderr]     Checking argh v0.1.19
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking md5 v0.7.0
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking parasail-rs v0.7.9
[INFO] [stderr]     Checking cgdist v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused dependency `rmp-serde`
[INFO] [stderr]   --> Cargo.toml:65:15
[INFO] [stderr]    |
[INFO] [stderr] 65 | [dependencies.rmp-serde]
[INFO] [stderr]    |               ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `rmp-serde`
[INFO] [stderr] warning: `cgdist` (manifest) generated 1 warning
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 29s
[INFO] running `Command { std: "docker" "inspect" "ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613", kill_on_drop: false }`
[INFO] [stdout] ae3a7437bb9e756f72f6be844bf6c75f916b7813c047393f38fb7cfbcea5c613