[INFO] cloning repository https://github.com/WJackKing/prokaryote [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/WJackKing/prokaryote" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FWJackKing%2Fprokaryote", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FWJackKing%2Fprokaryote'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 297e5092194ceabc552456006ed28ad52cb0cd69 [INFO] checking WJackKing/prokaryote against 98fd715edd3a0a5aa8f2041d7e20a3143b0fc0d3 for pr-160235-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FWJackKing%2Fprokaryote" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/WJackKing/prokaryote [INFO] finished tweaking git repo https://github.com/WJackKing/prokaryote [INFO] tweaked toml for git repo https://github.com/WJackKing/prokaryote written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/WJackKing/prokaryote on toolchain 98fd715edd3a0a5aa8f2041d7e20a3143b0fc0d3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+98fd715edd3a0a5aa8f2041d7e20a3143b0fc0d3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/WJackKing/prokaryote already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+98fd715edd3a0a5aa8f2041d7e20a3143b0fc0d3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] warning: `prokaryote` (manifest) generated 1 warning [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rand v0.4.2 [INFO] [stderr] Downloaded fuchsia-zircon-sys v0.3.3 [INFO] [stderr] Downloaded bitflags v1.0.1 [INFO] [stderr] Downloaded fuchsia-zircon v0.3.3 [INFO] [stderr] Downloaded libc v0.2.40 [INFO] [stderr] Downloaded winapi v0.3.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa [INFO] running `Command { std: "docker" "start" "5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa" "/opt/rustwide/cargo-home/bin/cargo" "+98fd715edd3a0a5aa8f2041d7e20a3143b0fc0d3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa" "/opt/rustwide/cargo-home/bin/cargo" "+98fd715edd3a0a5aa8f2041d7e20a3143b0fc0d3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024` [INFO] [stderr] warning: `prokaryote` (manifest) generated 1 warning [INFO] [stderr] Checking libc v0.2.40 [INFO] [stderr] Checking rand v0.4.2 [INFO] [stderr] Checking prokaryote v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/dna/base.rs:27:14 [INFO] [stdout] | [INFO] [stdout] 27 | 0...4 => Ok(Base { base }), [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(ellipsis_inclusive_range_patterns)]` (part of `#[warn(rust_2021_compatibility)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/dna/mod.rs:40:18 [INFO] [stdout] | [INFO] [stdout] 40 | 0...4 => dna.push_num(base).unwrap(), [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/protein/aa.rs:22:14 [INFO] [stdout] | [INFO] [stdout] 22 | 0...21 => Ok(Aa { aa }), [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/protein/mod.rs:33:18 [INFO] [stdout] | [INFO] [stdout] 33 | 0...21 => p.push_num(a).unwrap(), [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/dna/base.rs:27:14 [INFO] [stdout] | [INFO] [stdout] 27 | 0...4 => Ok(Base { base }), [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(ellipsis_inclusive_range_patterns)]` (part of `#[warn(rust_2021_compatibility)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/dna/mod.rs:40:18 [INFO] [stdout] | [INFO] [stdout] 40 | 0...4 => dna.push_num(base).unwrap(), [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/protein/aa.rs:22:14 [INFO] [stdout] | [INFO] [stdout] 22 | 0...21 => Ok(Aa { aa }), [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: `...` range patterns are deprecated [INFO] [stdout] --> src/protein/mod.rs:33:18 [INFO] [stdout] | [INFO] [stdout] 33 | 0...21 => p.push_num(a).unwrap(), [INFO] [stdout] | ^^^ help: use `..=` for an inclusive range [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `dna_io` is never read [INFO] [stdout] --> src/orf/mod.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 3 | pub struct Orf<'a> { [INFO] [stdout] | --- field in this struct [INFO] [stdout] 4 | dna_io: &'a mut Dnaio, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/dna/mod.rs:48:18 [INFO] [stdout] | [INFO] [stdout] 48 | pub fn codon(&self, offset: usize) -> Option { [INFO] [stdout] | ^^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 48 | pub fn codon(&self, offset: usize) -> Option> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/dna/codon.rs:90:26 [INFO] [stdout] | [INFO] [stdout] 90 | pub fn from_dna(dna: &Dna, offset: usize) -> GetCodon { [INFO] [stdout] | ^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 90 | pub fn from_dna(dna: &Dna, offset: usize) -> GetCodon<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/orf/mod.rs:12:24 [INFO] [stdout] | [INFO] [stdout] 12 | pub fn new(dna_io: &mut Dnaio, record_index: usize) -> Result { [INFO] [stdout] | ^^^^^^^^^^ the lifetime is elided here ^^^ the same lifetime is hidden here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 12 | pub fn new(dna_io: &mut Dnaio, record_index: usize) -> Result, &'static str> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `dna_io` is never read [INFO] [stdout] --> src/orf/mod.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 3 | pub struct Orf<'a> { [INFO] [stdout] | --- field in this struct [INFO] [stdout] 4 | dna_io: &'a mut Dnaio, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/dna/mod.rs:48:18 [INFO] [stdout] | [INFO] [stdout] 48 | pub fn codon(&self, offset: usize) -> Option { [INFO] [stdout] | ^^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 48 | pub fn codon(&self, offset: usize) -> Option> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/dna/codon.rs:90:26 [INFO] [stdout] | [INFO] [stdout] 90 | pub fn from_dna(dna: &Dna, offset: usize) -> GetCodon { [INFO] [stdout] | ^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 90 | pub fn from_dna(dna: &Dna, offset: usize) -> GetCodon<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/orf/mod.rs:12:24 [INFO] [stdout] | [INFO] [stdout] 12 | pub fn new(dna_io: &mut Dnaio, record_index: usize) -> Result { [INFO] [stdout] | ^^^^^^^^^^ the lifetime is elided here ^^^ the same lifetime is hidden here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 12 | pub fn new(dna_io: &mut Dnaio, record_index: usize) -> Result, &'static str> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.13s [INFO] running `Command { std: "docker" "inspect" "5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa", kill_on_drop: false }` [INFO] [stdout] 5946027aeae00e4705a9f4101f5c3338d36576ad0046124203c77f09f0c117fa