[INFO] cloning repository https://github.com/zqfang/velocyto-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zqfang/velocyto-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzqfang%2Fvelocyto-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzqfang%2Fvelocyto-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e6b6ee98e73ac4dea912017fab64aa22c2b7f14b
[INFO] checking zqfang/velocyto-rs against 5c543b0b8c73c7b72bc8284ced4fb22ead15734d for pr-160186
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzqfang%2Fvelocyto-rs" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/zqfang/velocyto-rs
[INFO] finished tweaking git repo https://github.com/zqfang/velocyto-rs
[INFO] tweaked toml for git repo https://github.com/zqfang/velocyto-rs written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/zqfang/velocyto-rs on toolchain 5c543b0b8c73c7b72bc8284ced4fb22ead15734d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5c543b0b8c73c7b72bc8284ced4fb22ead15734d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/zqfang/velocyto-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5c543b0b8c73c7b72bc8284ced4fb22ead15734d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:67:12
[INFO] [stderr]    |
[INFO] [stderr] 67 | homepage = "https://github.com/zqfang/velocyto-rs"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 73 | repository = "https://github.com/zqfang/velocyto-rs"
[INFO] [stderr]    |              ---------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `velocyto-rs` (manifest) generated 1 warning
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.20.0
[INFO] [stderr]   Downloaded kdtree v0.7.0
[INFO] [stderr]   Downloaded sprs v0.11.1
[INFO] [stderr]   Downloaded order-stat v0.1.3
[INFO] [stderr]   Downloaded noodles-csi v0.56.0
[INFO] [stderr]   Downloaded linfa-kernel v0.7.1
[INFO] [stderr]   Downloaded linfa-reduction v0.7.1
[INFO] [stderr]   Downloaded linfa-nn v0.7.2
[INFO] [stderr]   Downloaded hdf5-pure-rust-derive v0.3.6
[INFO] [stderr]   Downloaded noodles-bgzf v0.47.0
[INFO] [stderr]   Downloaded linfa-linalg v0.1.0
[INFO] [stderr]   Downloaded noodles-sam v0.85.0
[INFO] [stderr]   Downloaded noodles-bam v0.90.0
[INFO] [stderr]   Downloaded jiff-static v0.2.27
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded linfa v0.7.1
[INFO] [stderr]   Downloaded jiff v0.2.27
[INFO] [stderr]   Downloaded hdf5-pure-rust v0.3.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89
[INFO] running `Command { std: "docker" "start" "f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89" "/opt/rustwide/cargo-home/bin/cargo" "+5c543b0b8c73c7b72bc8284ced4fb22ead15734d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89" "/opt/rustwide/cargo-home/bin/cargo" "+5c543b0b8c73c7b72bc8284ced4fb22ead15734d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:67:12
[INFO] [stderr]    |
[INFO] [stderr] 67 | homepage = "https://github.com/zqfang/velocyto-rs"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 73 | repository = "https://github.com/zqfang/velocyto-rs"
[INFO] [stderr]    |              ---------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `velocyto-rs` (manifest) generated 1 warning
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling zerocopy v0.8.48
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking either v1.16.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]     Checking zlib-rs v0.6.3
[INFO] [stderr]    Compiling linfa v0.7.1
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking bytes v1.11.1
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking noodles-core v0.20.0
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking order-stat v0.1.3
[INFO] [stderr]     Checking simd-adler32 v0.3.9
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking rand_xoshiro v0.6.0
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking log v0.4.30
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking getrandom v0.4.2
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking once_cell v1.21.4
[INFO] [stderr]     Checking noodles-bgzf v0.47.0
[INFO] [stderr]     Checking jiff v0.2.27
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking noodles-csi v0.56.0
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking noisy_float v0.2.1
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking noodles-sam v0.85.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking simba v0.8.1
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking noodles-bam v0.90.0
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]     Checking env_filter v1.0.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling phf_macros v0.11.3
[INFO] [stderr]    Compiling hdf5-pure-rust-derive v0.3.6
[INFO] [stderr]     Checking env_logger v0.11.10
[INFO] [stderr]     Checking phf v0.11.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking kdtree v0.7.0
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking sprs v0.11.1
[INFO] [stderr]     Checking hdf5-pure-rust v0.3.6
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking ndarray-stats v0.5.1
[INFO] [stderr]     Checking argmin-math v0.4.0
[INFO] [stderr]     Checking linfa-linalg v0.1.0
[INFO] [stderr]     Checking ndarray-rand v0.14.0
[INFO] [stderr]     Checking nalgebra v0.32.6
[INFO] [stderr]     Checking linfa-nn v0.7.2
[INFO] [stderr]     Checking linfa-kernel v0.7.1
[INFO] [stderr]     Checking linfa-reduction v0.7.1
[INFO] [stderr]     Checking argmin v0.10.0
[INFO] [stderr]     Checking statrs v0.17.1
[INFO] [stderr]     Checking velocyto-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused dependency `argmin`
[INFO] [stderr]  --> Cargo.toml:7:1
[INFO] [stderr]   |
[INFO] [stderr] 7 | argmin = "0.10"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `argmin`
[INFO] [stderr] warning: unused dependency `linfa-reduction`
[INFO] [stderr]   --> Cargo.toml:13:1
[INFO] [stderr]    |
[INFO] [stderr] 13 | linfa-reduction = "0.7"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `linfa-reduction`
[INFO] [stderr] warning: unused dependency `thiserror`
[INFO] [stderr]   --> Cargo.toml:20:1
[INFO] [stderr]    |
[INFO] [stderr] 20 | thiserror = "2"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `thiserror`
[INFO] [stderr] warning: `velocyto-rs` (manifest) generated 3 warnings
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 51.95s
[INFO] running `Command { std: "docker" "inspect" "f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89", kill_on_drop: false }`
[INFO] [stdout] f42b88366f8dcdd8bff51c5da47a769f45f44f97ba23ca733d6d063f63016c89
