[INFO] fetching crate bam_tide 1.2.0... [INFO] checking bam_tide-1.2.0 against 011c518242557d21690f7936b5812318dc2fec47 for pr-159877 [INFO] extracting crate bam_tide 1.2.0 into /workspace/builds/worker-3-tc2/source [INFO] started tweaking crates.io crate bam_tide 1.2.0 [INFO] finished tweaking crates.io crate bam_tide 1.2.0 [INFO] tweaked toml for crates.io crate bam_tide 1.2.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate bam_tide 1.2.0 on toolchain 011c518242557d21690f7936b5812318dc2fec47 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+011c518242557d21690f7936b5812318dc2fec47" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate bam_tide 1.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+011c518242557d21690f7936b5812318dc2fec47" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1fa6594d87c8fa7b311925a7a77a16f539833322d9dfba4ce891f211db2f90b1" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806 [INFO] running `Command { std: "docker" "start" "6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806" "/opt/rustwide/cargo-home/bin/cargo" "+011c518242557d21690f7936b5812318dc2fec47" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806" "/opt/rustwide/cargo-home/bin/cargo" "+011c518242557d21690f7936b5812318dc2fec47" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling openssl-src v300.5.5+3.5.5 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling libz-sys v1.1.24 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Compiling openssl-sys v0.9.111 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Checking icu_normalizer v2.1.1 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Checking regex-automata v0.4.14 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.85+curl-8.18.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling portable-atomic v1.13.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking percent-encoding v2.3.2 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking form_urlencoded v1.2.2 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking anstream v0.6.21 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling libdeflate-sys v0.13.0 [INFO] [stderr] Compiling rustls v0.21.12 [INFO] [stderr] Checking clap_lex v1.0.0 [INFO] [stderr] Checking console v0.16.2 [INFO] [stderr] Checking clap_builder v4.5.60 [INFO] [stderr] Checking futures-util v0.3.32 [INFO] [stderr] Checking rustls-webpki v0.101.7 [INFO] [stderr] Checking sct v0.7.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Checking predicates-core v1.0.10 [INFO] [stderr] Checking bitflags v2.11.0 [INFO] [stderr] Checking unit-prefix v0.5.2 [INFO] [stderr] Checking num-format v0.4.4 [INFO] [stderr] Checking rustls-native-certs v0.6.3 [INFO] [stderr] Checking rustix v1.1.4 [INFO] [stderr] Checking clap v4.5.60 [INFO] [stderr] Checking indicatif v0.18.4 [INFO] [stderr] Checking chrono v0.4.44 [INFO] [stderr] Checking http v0.2.12 [INFO] [stderr] Checking futures-executor v0.3.32 [INFO] [stderr] Compiling ufmt-macros v0.3.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking getrandom v0.4.2 [INFO] [stderr] Checking webpki v0.22.4 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking termtree v0.5.1 [INFO] [stderr] Checking ufmt-write v0.1.0 [INFO] [stderr] Checking difflib v0.4.0 [INFO] [stderr] Compiling assert_cmd v2.1.2 [INFO] [stderr] Checking ufmt v0.2.0 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking tempfile v3.26.0 [INFO] [stderr] Checking attohttpc v0.25.0 [INFO] [stderr] Checking predicates v3.1.4 [INFO] [stderr] Checking predicates-tree v1.0.13 [INFO] [stderr] Checking mapping_info v0.1.0 [INFO] [stderr] Checking futures v0.3.32 [INFO] [stderr] Checking libdeflater v0.13.0 [INFO] [stderr] Checking byteordered v0.6.0 [INFO] [stderr] Checking tokio v1.50.0 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Checking wait-timeout v0.2.1 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking stela-int-to-str v0.1.0 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking index_list v0.2.17 [INFO] [stderr] Checking scdata v0.1.0 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking bigtools v0.5.6 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking gtf_splice_index v0.4.0 [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806", kill_on_drop: false }` [INFO] [stdout] 6454fe1c6061821456aff1bd2f3a55dfd085188d5eaf89917274c4c660341806