[INFO] cloning repository https://github.com/gmc-norr/bayesphase
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/gmc-norr/bayesphase" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgmc-norr%2Fbayesphase", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgmc-norr%2Fbayesphase'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 17e294c6a7b8c2bf2d0d94936b3cb7bf055f75f0
[INFO] checking gmc-norr/bayesphase against 1af98b7cdf86932b76182a387f52f1be6f0c1be0 for pr-159706
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgmc-norr%2Fbayesphase" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/gmc-norr/bayesphase
[INFO] finished tweaking git repo https://github.com/gmc-norr/bayesphase
[INFO] tweaked toml for git repo https://github.com/gmc-norr/bayesphase written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/gmc-norr/bayesphase on toolchain 1af98b7cdf86932b76182a387f52f1be6f0c1be0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/gmc-norr/bayesphase already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded libz-sys v1.1.24
[INFO] [stderr]   Downloaded curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.5+3.5.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8
[INFO] running `Command { std: "docker" "start" "8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8" "/opt/rustwide/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8" "/opt/rustwide/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.183
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking clap_lex v1.0.0
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking clap_builder v4.5.60
[INFO] [stderr]    Compiling cc v1.2.56
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking jiff v0.2.23
[INFO] [stderr]    Compiling openssl-src v300.5.5+3.5.5
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling libz-sys v1.1.24
[INFO] [stderr]    Compiling curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]     Checking env_filter v1.0.0
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking ordered-float v4.6.0
[INFO] [stderr]     Checking env_logger v0.11.9
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking clap v4.5.60
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking url v2.5.8
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8", kill_on_drop: false }`
[INFO] [stdout] 8c1dbf2b0985364d7a23a0abc2f5e3476c947f07e7bb97394a377d58ed82c2e8
