[INFO] cloning repository https://github.com/keithyin/gsmm2-metric [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/gsmm2-metric" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] fa32ea3e3719e87e22500132eeac09f480503d4b [INFO] checking keithyin/gsmm2-metric against 1af98b7cdf86932b76182a387f52f1be6f0c1be0 for pr-159706 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/keithyin/gsmm2-metric [INFO] finished tweaking git repo https://github.com/keithyin/gsmm2-metric [INFO] tweaked toml for git repo https://github.com/keithyin/gsmm2-metric written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/keithyin/gsmm2-metric on toolchain 1af98b7cdf86932b76182a387f52f1be6f0c1be0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/keithyin/gsmm2-metric already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded buffer-redux v1.1.0 [INFO] [stderr] Downloaded intervaltree v0.2.7 [INFO] [stderr] Downloaded hp_tr_finder v0.2.3 [INFO] [stderr] Downloaded openssl-sys v0.9.115 [INFO] [stderr] Downloaded gskits v0.15.15 [INFO] [stderr] Downloaded mm2 v0.25.6 [INFO] [stderr] Downloaded minimap2 v0.1.23+minimap2.2.28 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded hp_tr_finder v0.4.0 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded bio v2.3.0 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded needletail v0.6.3 [INFO] [stderr] Downloaded minimap2-sys v0.1.30+minimap2.2.30 [INFO] [stderr] Downloaded libz-sys v1.1.28 [INFO] [stderr] Downloaded curl-sys v0.4.88+curl-8.20.0 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded openssl-src v300.6.0+3.6.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb [INFO] running `Command { std: "docker" "start" "bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb" "/opt/rustwide/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb" "/opt/rustwide/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Compiling libc v0.2.186 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Checking litemap v0.8.2 [INFO] [stderr] Checking writeable v0.6.3 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking zerofrom v0.1.7 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling icu_properties_data v2.2.0 [INFO] [stderr] Compiling icu_normalizer_data v2.2.0 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Checking yoke v0.8.2 [INFO] [stderr] Checking regex v1.12.3 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking typenum v1.20.0 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Checking zerovec v0.11.6 [INFO] [stderr] Checking zerotrie v0.2.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Checking hashbrown v0.17.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bitflags v2.11.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking rand v0.8.6 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling portable-atomic v1.13.1 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking tinystr v0.8.3 [INFO] [stderr] Checking potential_utf v0.1.5 [INFO] [stderr] Checking icu_collections v2.2.0 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking icu_locale_core v2.2.0 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling cc v1.2.62 [INFO] [stderr] Checking indexmap v2.14.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking num-conv v0.2.1 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking time v0.3.47 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking tracing-log v0.2.0 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking icu_provider v2.2.0 [INFO] [stderr] Compiling cmake v0.1.58 [INFO] [stderr] Compiling openssl-src v300.6.0+3.6.2 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Checking ordered-float v5.3.0 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking icu_properties v2.2.0 [INFO] [stderr] Checking icu_normalizer v2.2.0 [INFO] [stderr] Checking serde_json v1.0.149 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Checking matchers v0.2.0 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking tracing-serde v0.2.0 [INFO] [stderr] Compiling libz-sys v1.1.28 [INFO] [stderr] Compiling openssl-sys v0.9.115 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.88+curl-8.20.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling minimap2-sys v0.1.30+minimap2.2.30 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking intervaltree v0.2.7 [INFO] [stderr] Checking buffer-redux v1.1.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking uuid v1.23.1 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking tracing-subscriber v0.3.23 [INFO] [stderr] Checking idna_adapter v1.2.2 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking chrono v0.4.44 [INFO] [stderr] Checking needletail v0.6.3 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking crossbeam-queue v0.3.12 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking sysinfo v0.34.2 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking clap v4.6.1 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking rayon v1.12.0 [INFO] [stderr] Checking hp_tr_finder v0.2.3 [INFO] [stderr] Checking symlink v0.1.0 [INFO] [stderr] Checking hp_tr_finder v0.4.0 [INFO] [stderr] Checking tracing-appender v0.2.5 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking nalgebra v0.33.3 [INFO] [stderr] Checking minimap2 v0.1.23+minimap2.2.28 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking bio v2.3.0 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking rust-htslib v0.49.0 [INFO] [stderr] Checking gskits v0.15.15 [INFO] [stderr] Checking mm2 v0.25.6 [INFO] [stderr] Checking gsmm2-metric v0.8.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `hp_metric::HpMetric` and `hp_tr_metric::HpTrMetric` [INFO] [stdout] --> src/main.rs:18:18 [INFO] [stdout] | [INFO] [stdout] 18 | TMetric, hp_metric::HpMetric, hp_metric_v2::HpMetricV2, hp_tr_metric::HpTrMetric, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `hp_metric::HpMetric` and `hp_tr_metric::HpTrMetric` [INFO] [stdout] --> src/main.rs:18:18 [INFO] [stdout] | [INFO] [stdout] 18 | TMetric, hp_metric::HpMetric, hp_metric_v2::HpMetricV2, hp_tr_metric::HpTrMetric, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rev_part` [INFO] [stdout] --> src/metrics/hp_metric.rs:379:13 [INFO] [stdout] | [INFO] [stdout] 379 | let rev_part = &seq[1074..1074 + 100]; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rev_part` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `target_seq` [INFO] [stdout] --> src/metrics/hp_metric_v2.rs:317:13 [INFO] [stdout] | [INFO] [stdout] 317 | let target_seq = targetname2seq [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_target_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rev_part` [INFO] [stdout] --> src/metrics/hp_metric_v2.rs:458:13 [INFO] [stdout] | [INFO] [stdout] 458 | let rev_part = &seq[1074..1074 + 100]; [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rev_part` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Counter` is never constructed [INFO] [stdout] --> src/metrics/hp_metric_v2.rs:18:8 [INFO] [stdout] | [INFO] [stdout] 18 | struct Counter { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `update` is never used [INFO] [stdout] --> src/metrics/hp_metric_v2.rs:23:12 [INFO] [stdout] | [INFO] [stdout] 22 | impl Counter { [INFO] [stdout] | ------------ method in this implementation [INFO] [stdout] 23 | pub fn update(&mut self, misc: bool, cnt: usize) { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Counter` is never constructed [INFO] [stdout] --> src/metrics/hp_metric_v2.rs:18:8 [INFO] [stdout] | [INFO] [stdout] 18 | struct Counter { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `update` is never used [INFO] [stdout] --> src/metrics/hp_metric_v2.rs:23:12 [INFO] [stdout] | [INFO] [stdout] 22 | impl Counter { [INFO] [stdout] | ------------ method in this implementation [INFO] [stdout] 23 | pub fn update(&mut self, misc: bool, cnt: usize) { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 41s [INFO] running `Command { std: "docker" "inspect" "bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb", kill_on_drop: false }` [INFO] [stdout] bdbff6b5b3bdf768a686a71dc178d42c30897ebc961189293708b7ef67755aeb