[INFO] cloning repository https://github.com/jianshu93/DartUniFrac
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/jianshu93/DartUniFrac" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjianshu93%2FDartUniFrac", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjianshu93%2FDartUniFrac'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 2141b88c12bb3ec3e24a32c5309d072f04d2d0bb
[INFO] checking jianshu93/DartUniFrac against 1af98b7cdf86932b76182a387f52f1be6f0c1be0 for pr-159706
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjianshu93%2FDartUniFrac" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-2-tc1/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/jianshu93/DartUniFrac
[INFO] finished tweaking git repo https://github.com/jianshu93/DartUniFrac
[INFO] tweaked toml for git repo https://github.com/jianshu93/DartUniFrac written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/jianshu93/DartUniFrac on toolchain 1af98b7cdf86932b76182a387f52f1be6f0c1be0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/jianshu93/DartUniFrac already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 1 package to latest Rust 1.99.0-nightly compatible version
[INFO] [stderr]     Updating dartminhash v0.1.5 -> v0.1.6
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded sorbus v0.12.1
[INFO] [stderr]   Downloaded newick v0.11.0
[INFO] [stderr]   Downloaded cblas-sys v0.1.4
[INFO] [stderr]   Downloaded succparen v0.0.3
[INFO] [stderr]   Downloaded identity-hash v0.1.0
[INFO] [stderr]   Downloaded hdf5-metno-types v0.10.2
[INFO] [stderr]   Downloaded hdf5-metno-derive v0.9.3
[INFO] [stderr]   Downloaded lax v0.17.0
[INFO] [stderr]   Downloaded hdf5-metno-sys v0.10.1
[INFO] [stderr]   Downloaded fpcoa v0.1.2
[INFO] [stderr]   Downloaded hdf5-metno v0.10.1
[INFO] [stderr]   Downloaded katexit v0.1.5
[INFO] [stderr]   Downloaded getset v0.1.7
[INFO] [stderr]   Downloaded cauchy v0.4.0
[INFO] [stderr]   Downloaded alga v0.9.3
[INFO] [stderr]   Downloaded quantiles v0.7.1
[INFO] [stderr]   Downloaded indxvec v1.9.6
[INFO] [stderr]   Downloaded mmap-rs v0.7.0
[INFO] [stderr]   Downloaded env_filter v1.0.0
[INFO] [stderr]   Downloaded cpu-time v1.0.0
[INFO] [stderr]   Downloaded nalgebra v0.33.3
[INFO] [stderr]   Downloaded lax v0.18.1
[INFO] [stderr]   Downloaded anndists v0.1.5
[INFO] [stderr]   Downloaded hnsw_rs v0.3.4
[INFO] [stderr]   Downloaded sprs v0.11.4
[INFO] [stderr]   Downloaded mt19937 v3.1.0
[INFO] [stderr]   Downloaded blas-src v0.14.0
[INFO] [stderr]   Downloaded time-macros v0.2.29
[INFO] [stderr]   Downloaded array-init v0.1.1
[INFO] [stderr]   Downloaded tab-hash v0.3.0
[INFO] [stderr]   Downloaded emojis v0.7.2
[INFO] [stderr]   Downloaded time v0.3.49
[INFO] [stderr]   Downloaded annembed v0.1.6
[INFO] [stderr]   Downloaded dartminhash v0.1.6
[INFO] [stderr]   Downloaded hdf5-metno-src v0.9.5
[INFO] [stderr]   Downloaded lapack-sys v0.15.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e
[INFO] running `Command { std: "docker" "start" "ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e" "/opt/rustwide/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e" "/opt/rustwide/cargo-home/bin/cargo" "+1af98b7cdf86932b76182a387f52f1be6f0c1be0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling zerocopy v0.8.52
[INFO] [stderr]    Compiling memchr v2.8.2
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking smallvec v1.15.2
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking bitflags v2.13.0
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking hashbrown v0.17.1
[INFO] [stderr]     Checking log v0.4.32
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling enum-as-inner v0.6.1
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]    Compiling winnow v1.0.3
[INFO] [stderr]    Compiling num-conv v0.2.2
[INFO] [stderr]    Compiling cc v1.2.64
[INFO] [stderr]     Checking simd-adler32 v0.3.9
[INFO] [stderr]    Compiling ucd-trie v0.1.7
[INFO] [stderr]     Checking jiff v0.2.28
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]    Compiling time-core v0.1.9
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking combine v4.6.7
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling time-macros v0.2.29
[INFO] [stderr]    Compiling pest v2.8.6
[INFO] [stderr]    Compiling katexit v0.1.5
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]    Compiling toml_parser v1.1.2+spec-1.1.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]    Compiling virtue v0.0.18
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]    Compiling toml_datetime v1.1.1+spec-1.1.0
[INFO] [stderr]     Checking deranged v0.5.8
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]    Compiling hdf5-metno-src v0.9.5
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking sysctl v0.6.0
[INFO] [stderr]     Checking getrandom v0.4.2
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking cpu-time v1.0.0
[INFO] [stderr]     Checking uuid v1.23.3
[INFO] [stderr]     Checking time v0.3.49
[INFO] [stderr]    Compiling bincode_derive v2.0.1
[INFO] [stderr]    Compiling pest_meta v2.8.6
[INFO] [stderr]    Compiling toml_edit v0.25.12+spec-1.1.0
[INFO] [stderr]    Compiling tab-hash v0.3.0
[INFO] [stderr]     Checking lapack-sys v0.15.0
[INFO] [stderr]     Checking regex v1.10.6
[INFO] [stderr]     Checking nom v7.1.3
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking env_filter v1.0.0
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking env_logger v0.11.10
[INFO] [stderr]     Checking serde_bytes v0.11.19
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking anndists v0.1.5
[INFO] [stderr]    Compiling hdf5-metno-types v0.10.2
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking siphasher v1.0.3
[INFO] [stderr]    Compiling annembed v0.1.6
[INFO] [stderr]     Checking unty v0.0.4
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking bincode v2.0.1
[INFO] [stderr]    Compiling proc-macro-crate v3.5.0
[INFO] [stderr]     Checking phf_shared v0.12.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking mmap-rs v0.7.0
[INFO] [stderr]    Compiling pest_generator v2.8.6
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking rand_xoshiro v0.7.0
[INFO] [stderr]     Checking lapack-sys v0.14.0
[INFO] [stderr]     Checking memory-stats v1.2.0
[INFO] [stderr]     Checking hdrhistogram v7.5.4
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking identity-hash v0.1.0
[INFO] [stderr]    Compiling hdf5-metno v0.10.1
[INFO] [stderr]     Checking ascii v1.1.0
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]     Checking rand v0.9.4
[INFO] [stderr]     Checking quantiles v0.7.1
[INFO] [stderr]     Checking indxvec v1.9.6
[INFO] [stderr]     Checking permutation v0.4.1
[INFO] [stderr]    Compiling fpcoa v0.1.2
[INFO] [stderr]     Checking array-init v0.1.1
[INFO] [stderr]    Compiling pest_derive v2.8.6
[INFO] [stderr]     Checking sorbus v0.12.1
[INFO] [stderr]    Compiling hdf5-metno-derive v0.9.3
[INFO] [stderr]     Checking phf v0.12.1
[INFO] [stderr]     Checking mt19937 v3.1.0
[INFO] [stderr]     Checking succparen v0.0.3
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking emojis v0.7.2
[INFO] [stderr]     Checking dartminhash v0.1.6
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking hnsw_rs v0.3.4
[INFO] [stderr]     Checking rand_distr v0.5.1
[INFO] [stderr]     Checking bson v2.15.0
[INFO] [stderr]    Compiling hdf5-metno-sys v0.10.1
[INFO] [stderr]     Checking cauchy v0.4.0
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]     Checking lax v0.18.1
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking lax v0.17.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking newick v0.11.0
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]     Checking sprs v0.11.4
[INFO] [stderr]     Checking dartunifrac v0.3.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: fields `node_name` and `is_leaf` are never read
[INFO] [stdout]   --> src/emdunifrac.rs:39:5
[INFO] [stdout]    |
[INFO] [stdout] 34 | struct TreeIndex {
[INFO] [stdout]    |        --------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 39 |     node_name: Vec<Option<String>>,   // postorder node -> name
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout] 40 |     is_leaf: Vec<bool>,               // postorder node -> compact leaf?
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `TreeIndex` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `node_name` and `is_leaf` are never read
[INFO] [stdout]   --> src/emdunifrac.rs:39:5
[INFO] [stdout]    |
[INFO] [stdout] 34 | struct TreeIndex {
[INFO] [stdout]    |        --------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 39 |     node_name: Vec<Option<String>>,   // postorder node -> name
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout] 40 |     is_leaf: Vec<bool>,               // postorder node -> compact leaf?
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `TreeIndex` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 19s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nix v0.30.1, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 7`
[INFO] running `Command { std: "docker" "inspect" "ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e", kill_on_drop: false }`
[INFO] [stdout] ec3340407a7c5660887085f4164f7d4f8e5af062b4984745922ec22fd0ccc64e