[INFO] cloning repository https://github.com/tomdstanton/pyggcat
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tomdstanton/pyggcat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftomdstanton%2Fpyggcat", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftomdstanton%2Fpyggcat'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 59c5a2a13afd6a60a2b53345457bab4127faba65
[INFO] checking tomdstanton/pyggcat against 3d50c25bc66853bf0ad205529d0f305a1d841b5e for pr-159598
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftomdstanton%2Fpyggcat" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/tomdstanton/pyggcat
[INFO] finished tweaking git repo https://github.com/tomdstanton/pyggcat
[INFO] tweaked toml for git repo https://github.com/tomdstanton/pyggcat written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/tomdstanton/pyggcat on toolchain 3d50c25bc66853bf0ad205529d0f305a1d841b5e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3d50c25bc66853bf0ad205529d0f305a1d841b5e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/tomdstanton/pyggcat already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3d50c25bc66853bf0ad205529d0f305a1d841b5e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/algbio/ggcat.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/dynamic-dispatch-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/instrumenter-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/mt-debug-counters-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/nightly-quirks-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/papi-bindings-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/parallel-processor-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/streaming-libdeflate-rs.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded genome-graph v11.0.0
[INFO] [stderr]   Downloaded traitgraph v8.1.2
[INFO] [stderr]   Downloaded matchtigs v2.1.9
[INFO] [stderr]   Downloaded fdlimit v0.3.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded limits-rs v0.2.0
[INFO] [stderr]   Downloaded mt-debug-counters v0.1.4
[INFO] [stderr]   Downloaded simplelog v0.12.2
[INFO] [stderr]   Downloaded replace_with v0.1.8
[INFO] [stderr]   Downloaded roaring v0.10.12
[INFO] [stderr]   Downloaded desse v0.2.1
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded desse-derive v0.2.1
[INFO] [stderr]   Downloaded virtue v0.0.18
[INFO] [stderr]   Downloaded dynamic-dispatch v0.5.4
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded compact-genome v12.5.0
[INFO] [stderr]   Downloaded bincode v2.0.1
[INFO] [stderr]   Downloaded binary-heap-plus v0.5.0
[INFO] [stderr]   Downloaded bincode_derive v2.0.1
[INFO] [stderr]   Downloaded traitsequence v8.1.2
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded instrumenter v0.1.4
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded parallel-processor v0.2.3
[INFO] [stderr]   Downloaded bitbound v0.1.1
[INFO] [stderr]   Downloaded instrumenter-proc-macro v0.1.1
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded bitvector v0.1.5
[INFO] [stderr]   Downloaded atomic-counter v1.0.1
[INFO] [stderr]   Downloaded nightly-quirks v0.1.5
[INFO] [stderr]   Downloaded filebuffer v1.0.1
[INFO] [stderr]   Downloaded disjoint-sets v0.4.2
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded dynamic-dispatch-proc-macro v0.5.0
[INFO] [stderr]   Downloaded permutation v0.4.1
[INFO] [stderr]   Downloaded bigraph v5.0.1
[INFO] [stderr]   Downloaded compare v0.1.0
[INFO] [stderr]   Downloaded traitgraph-algo v8.1.2
[INFO] [stderr]   Downloaded streaming-libdeflate-rs v0.2.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae
[INFO] running `Command { std: "docker" "start" "36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae" "/opt/rustwide/cargo-home/bin/cargo" "+3d50c25bc66853bf0ad205529d0f305a1d841b5e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae" "/opt/rustwide/cargo-home/bin/cargo" "+3d50c25bc66853bf0ad205529d0f305a1d841b5e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking lock_api v0.4.14
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling lz4-sys v1.11.1+lz4-1.10.0
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]    Compiling virtue v0.0.18
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]    Compiling procfs v0.18.0
[INFO] [stderr]     Checking addr2line v0.25.1
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking nightly-quirks v0.1.5
[INFO] [stderr]     Checking object v0.37.3
[INFO] [stderr]     Checking rand v0.9.4
[INFO] [stderr]     Checking filebuffer v1.0.1
[INFO] [stderr]     Checking typenum v1.20.0
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking unty v0.0.4
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]     Checking bytesize v1.3.3
[INFO] [stderr]     Checking rustc-demangle v0.1.27
[INFO] [stderr]     Checking arc-swap v1.9.1
[INFO] [stderr]     Checking dashmap v6.1.0
[INFO] [stderr]     Checking mt-debug-counters v0.1.4
[INFO] [stderr]     Checking page_size v0.6.0
[INFO] [stderr]     Checking replace_with v0.1.8
[INFO] [stderr]     Checking rustc-hash v2.1.2
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]     Checking chrono v0.4.44
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling target-lexicon v0.13.5
[INFO] [stderr]     Checking bitbound v0.1.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling bincode_derive v2.0.1
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking roaring v0.10.12
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking siphasher v1.0.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking bitvec v1.0.1
[INFO] [stderr]     Checking bincode v2.0.1
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling pyo3-build-config v0.28.3
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking traitsequence v8.1.2
[INFO] [stderr]     Checking tokio v1.52.1
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking procfs-core v0.18.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking petgraph v0.7.1
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling num-conv v0.2.1
[INFO] [stderr]    Compiling time-core v0.1.8
[INFO] [stderr]    Compiling instrumenter-proc-macro v0.1.1
[INFO] [stderr]    Compiling desse-derive v0.2.1
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling time-macros v0.2.27
[INFO] [stderr]     Checking instrumenter v0.1.4
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.3.0
[INFO] [stderr]     Checking desse v0.2.1
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking bitvector v0.1.5
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking disjoint-sets v0.4.2
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/3d50c25bc66853bf0ad205529d0f305a1d841b5e/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.117/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=5635195cd3c6c081 -C extra-filename=-c107d8699e5d08dc --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-d4cb564e807a9cd7.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-aa2c5b8519914b46.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-8c98a1a0e58216a9.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae", kill_on_drop: false }`
[INFO] [stdout] 36afbaf3504c5839c18eef63ddc92e5357eb0be9a1e1eccfe1347d4f9af0eeae
