[INFO] cloning repository https://github.com/MattesMrzik/model_search_phylo
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MattesMrzik/model_search_phylo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMattesMrzik%2Fmodel_search_phylo", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMattesMrzik%2Fmodel_search_phylo'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0549a385addf977c228aaa293753b3d9d961292b
[INFO] checking MattesMrzik/model_search_phylo against eff8269f797067c30555e77f160ec84c0ed15cd9 for pr-159356
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMattesMrzik%2Fmodel_search_phylo" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/MattesMrzik/model_search_phylo
[INFO] finished tweaking git repo https://github.com/MattesMrzik/model_search_phylo
[INFO] tweaked toml for git repo https://github.com/MattesMrzik/model_search_phylo written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/MattesMrzik/model_search_phylo on toolchain eff8269f797067c30555e77f160ec84c0ed15cd9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/MattesMrzik/rust-phylo.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 229 packages to latest compatible versions
[INFO] [stderr]       Adding ftail v0.2.1 (available: v0.3.1)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rstest v0.18.2
[INFO] [stderr]   Downloaded rstest_macros v0.18.2
[INFO] [stderr]   Downloaded stats-cli v3.0.1
[INFO] [stderr]   Downloaded pest_generator v2.8.8
[INFO] [stderr]   Downloaded pest v2.8.8
[INFO] [stderr]   Downloaded pest_meta v2.8.8
[INFO] [stderr]   Downloaded ntimestamp v1.0.0
[INFO] [stderr]   Downloaded pest_derive v2.8.8
[INFO] [stderr]   Downloaded ftail v0.2.1
[INFO] [stderr]   Downloaded matrixmultiply v0.3.11
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded argmin v0.8.1
[INFO] [stderr]   Downloaded slog-term v2.9.2
[INFO] [stderr]   Downloaded slog v2.8.2
[INFO] [stderr]   Downloaded slog-async v2.8.0
[INFO] [stderr]   Downloaded slog-json v2.6.1
[INFO] [stderr]   Downloaded argmin-math v0.3.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c36f533e8924a726b63f9d01e781fa8c8c28c96d1d595403829afb31452ee0f5" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a
[INFO] running `Command { std: "docker" "start" "b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a" "/opt/rustwide/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a" "/opt/rustwide/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]    Compiling rustversion v1.0.23
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking futures-core v0.3.33
[INFO] [stderr]    Compiling time-macros v0.2.32
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling ucd-trie v0.1.7
[INFO] [stderr]     Checking futures-io v0.3.33
[INFO] [stderr]    Compiling serde_json v1.0.151
[INFO] [stderr]    Compiling toml_edit v0.25.13+spec-1.1.0
[INFO] [stderr]     Checking futures-channel v0.3.33
[INFO] [stderr]    Compiling rstest_macros v0.18.2
[INFO] [stderr]    Compiling pest v2.8.8
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking thread_local v1.1.10
[INFO] [stderr]     Checking either v1.17.0
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling slog-async v2.8.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking hashbrown v0.17.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling regex v1.13.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking is-terminal v0.4.17
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking bitflags v2.13.1
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling relative-path v1.9.3
[INFO] [stderr]     Checking take_mut v0.2.2
[INFO] [stderr]     Checking term v1.2.1
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]    Compiling slog v2.8.2
[INFO] [stderr]     Checking clap_builder v4.6.5
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]    Compiling proc-macro-crate v3.5.0
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[INFO] [stderr]    Compiling thiserror-impl v2.0.19
[INFO] [stderr]     Checking instant v0.1.13
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[INFO] [stderr]    Compiling pest_meta v2.8.8
[INFO] [stderr]     Checking fastrand v2.5.0
[INFO] [stderr]     Checking custom_derive v0.1.7
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[INFO] [stderr]     Checking bitvec v1.1.1
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking ftail v0.2.1
[INFO] [stderr]     Checking thiserror v2.0.19
[INFO] [stderr]     Checking rand v0.9.5
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[INFO] [stderr]     Checking itertools v0.14.0
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[INFO] [stderr]     Checking assert_matches v1.5.0
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[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking erased-serde v0.3.31
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_xoshiro v0.6.0
[INFO] [stderr]     Checking rand v0.8.7
[INFO] [stderr]     Checking slog-term v2.9.2
[INFO] [stderr]     Checking slog-json v2.6.1
[INFO] [stderr]    Compiling pest_generator v2.8.8
[INFO] [stderr]     Checking stats-cli v3.0.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling futures-macro v0.3.33
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling num_enum_derive v0.7.6
[INFO] [stderr]    Compiling pest_derive v2.8.8
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking nalgebra v0.32.6
[INFO] [stderr]     Checking num_enum v0.7.6
[INFO] [stderr]     Checking futures-util v0.3.33
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking argmin-math v0.3.0
[INFO] [stderr]     Checking argmin v0.8.1
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking futures-executor v0.3.33
[INFO] [stderr]     Checking futures v0.3.33
[INFO] [stderr]     Checking rstest v0.18.2
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking phylo v0.1.0 (https://github.com/MattesMrzik/rust-phylo.git?branch=phylo_for_jati#0d435018)
[INFO] [stderr]     Checking model_search_phylo v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 57.26s
[INFO] running `Command { std: "docker" "inspect" "b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a", kill_on_drop: false }`
[INFO] [stdout] b086728b1e6e39bbc6645b75e85226de0cda1e6d30acfddc9a103431c7f60f7a
