[INFO] cloning repository https://github.com/wdecoster/nanoget-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wdecoster/nanoget-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwdecoster%2Fnanoget-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwdecoster%2Fnanoget-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ef61429aacb18e829067a96b195e8caa3a318889
[INFO] checking wdecoster/nanoget-rs against eff8269f797067c30555e77f160ec84c0ed15cd9 for pr-159356
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwdecoster%2Fnanoget-rs" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/wdecoster/nanoget-rs
[INFO] finished tweaking git repo https://github.com/wdecoster/nanoget-rs
[INFO] tweaked toml for git repo https://github.com/wdecoster/nanoget-rs written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/wdecoster/nanoget-rs on toolchain eff8269f797067c30555e77f160ec84c0ed15cd9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/wdecoster/nanoget-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded safe_arch v1.1.0
[INFO] [stderr]   Downloaded zmij v1.0.2
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded rust-htslib v1.0.1
[INFO] [stderr]   Downloaded wide v1.6.0
[INFO] [stderr]   Downloaded statrs v0.19.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bit-set v0.10.0
[INFO] [stderr]   Downloaded bio v4.0.1
[INFO] [stderr]   Downloaded glam v0.33.2
[INFO] [stderr]   Downloaded curl-sys v0.4.83+curl-8.15.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c36f533e8924a726b63f9d01e781fa8c8c28c96d1d595403829afb31452ee0f5" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365
[INFO] running `Command { std: "docker" "start" "529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365" "/opt/rustwide/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365" "/opt/rustwide/cargo-home/bin/cargo" "+eff8269f797067c30555e77f160ec84c0ed15cd9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]    Compiling find-msvc-tools v0.1.2
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling serde v1.0.229
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.20
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling thiserror v2.0.19
[INFO] [stderr]     Checking safe_arch v1.1.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking chacha20 v0.10.1
[INFO] [stderr]     Checking anstream v1.0.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling zmij v1.0.2
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling syn v3.0.3
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking indexmap v2.11.4
[INFO] [stderr]     Checking rand v0.10.2
[INFO] [stderr]     Checking csv-core v0.1.12
[INFO] [stderr]     Checking wide v1.6.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling serde_json v1.0.151
[INFO] [stderr]    Compiling anyhow v1.0.104
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking clap_builder v4.6.2
[INFO] [stderr]     Checking rayon-core v1.13.0
[INFO] [stderr]     Checking bit-set v0.10.0
[INFO] [stderr]     Checking petgraph v0.8.2
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking ordered-float v5.0.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking getrandom v0.2.16
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]    Compiling cc v1.2.38
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling getrandom v0.4.3
[INFO] [stderr]     Checking libbz2-rs-sys v0.2.2
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling regex v1.12.4
[INFO] [stderr]    Compiling openssl-src v300.5.2+3.5.2
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking bzip2 v0.6.1
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking float-cmp v0.10.0
[INFO] [stderr]    Compiling assert_cmd v2.2.2
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling openssl-sys v0.9.109
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking bstr v1.12.0
[INFO] [stderr]     Checking env_filter v2.0.0
[INFO] [stderr]     Checking predicates v3.1.4
[INFO] [stderr]     Checking env_logger v0.11.11
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling thiserror-impl v2.0.19
[INFO] [stderr]    Compiling clap_derive v4.6.4
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.0
[INFO] [stderr]    Compiling zerovec-derive v0.11.1
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking clap v4.6.4
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.8.0
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking zerovec v0.11.4
[INFO] [stderr]     Checking zerotrie v0.2.2
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking simba v0.10.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking tinystr v0.8.1
[INFO] [stderr]     Checking potential_utf v0.1.3
[INFO] [stderr]     Checking icu_collections v2.0.0
[INFO] [stderr]     Checking icu_locale_core v2.0.0
[INFO] [stderr]     Checking icu_provider v2.0.0
[INFO] [stderr]     Checking icu_properties v2.0.1
[INFO] [stderr]     Checking icu_normalizer v2.0.0
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.7
[INFO] [stderr]     Checking nalgebra v0.35.0
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v4.0.1
[INFO] [stderr]     Checking statrs v0.19.0
[INFO] [stderr]     Checking rust-htslib v1.0.1
[INFO] [stderr]     Checking nanoget-rs v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 24s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 8`
[INFO] running `Command { std: "docker" "inspect" "529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365", kill_on_drop: false }`
[INFO] [stdout] 529caddbd6246c82bcc389ccc1f170cc9270ed7594f6ce301bcc169daa736365
